ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl53a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF020716.1|AF020716 Triticum aestivum histidyl-tRNA synthetas... 400 e-108
2gb|AF020717.1|AF020717 Triticum aestivum histidyl-tRNA synthetas... 323 2e-85
3gb|AY105543.1| Zea mays PCO101093 mRNA sequence 46 0.078
4emb|Z97056.1|HS434P1 Human DNA sequence from clone RP3-434P1 on ... 44 0.31
5emb|AL157838.24| Human DNA sequence from clone RP4-724E16 on chr... 44 0.31
6gb|AF312915.1|AF312915 Homo sapiens chromosome 20 clones 97 and ... 44 0.31
7ref|XM_493924.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
8gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
10gb|AC004846.2|AC004846 Homo sapiens PAC clone RP4-647C14 from 14... 42 1.2
11emb|Z85984.1|OSHISRS O.sativa mRNA histidyl tRNA synthetase 42 1.2
12dbj|AK099789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
13emb|BX855612.9| Zebrafish DNA sequence from clone CH211-198C22 i... 42 1.2
14dbj|AK059520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
15gb|AC127593.4| Mus musculus BAC clone RP23-390G15 from chromosom... 40 4.8
16gb|AC124371.2| Mus musculus BAC clone RP24-556P1 from chromosome... 40 4.8
17emb|BX005414.13| Zebrafish DNA sequence from clone DKEY-21C19 in... 40 4.8
18gb|AC097357.2| Homo sapiens chromosome 3 clone RP11-137N22, comp... 40 4.8
19gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 4.8
20gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 4.8
21gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 4.8
22gb|AC107642.14| Mus musculus chromosome 8, clone RP23-54J1, comp... 40 4.8
23dbj|AK119742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
24emb|AL445643.12| Human DNA sequence from clone RP11-350D23 on ch... 40 4.8
25emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 4.8
26gb|DQ058411.1| Apostichopus japonicus ferritin mRNA, complete cds 40 4.8
27gb|AF125461.1| Caenorhabditis elegans cosmid Y8A9A, complete seq... 40 4.8
28dbj|AB053352.1| Staphylococcus aureus gene for DnaE, complete cds 40 4.8 
>gb|AF020716.1|AF020716 Triticum aestivum histidyl-tRNA synthetase mRNA, partial cds
          Length = 1633

 Score =  400 bits (202), Expect = e-108
 Identities = 312/348 (89%), Gaps = 3/348 (0%)
 Strand = Plus / Minus

                                                                        
Query: 13   cagggatttcattccaccaagcacttaacatgtaaggcaacaattcaaacaatttgtgat 72
            ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct: 1633 cagggatttcattccaccaagcactcaacatataaggcaacagttcaaacaatttgtgat 1574

                                                                        
Query: 73   catcagtattaaatcgaggagccgcactgtcttgtgtacacatctcagcaacagcaaaat 132
            ||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct: 1573 catcagtattaaatcaaggagccgcaccgtcctgtgtacacatctcagcatcagcaaaat 1514

                                                                        
Query: 133  ggccgcacagaaaaaccaagaaccacataccgcccagtactcacgcacacgctacatctt 192
            ||  |||||| |||||||| ||| |  || ||||||||   ||| |||   |||||||||
Sbjct: 1513 ggatgcacaggaaaaccaacaacgatgtatcgcccagt---cacacacgttctacatctt 1457

                                                                        
Query: 193  tctaagatttaccttctaggggttagatagtctctgcttcagcacctcaacgaaatcctt 252
            || |||||||    |||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 1456 tcaaagatttcatctctaagggttagataatctctgcttcagcacctcaacgaaatcttt 1397

                                                                        
Query: 253  cctcggaacctcctcttcctggttagccgtgatgtccttcagcttcaccttcccatccct 312
            ||| |||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||
Sbjct: 1396 ccttggaacctcctcttcctggttagccctaatgtccttcagtttcaccttcccgtccct 1337

                                                            
Query: 313  caactcggactcgccgaccagcaccatccacgggatgcccgtctgcgt 360
            ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1336 caactcggactcgccgaccagcaccatccacgggatgcctgtctgcgt 1289
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>gb|AF020717.1|AF020717 Triticum aestivum histidyl-tRNA synthetase mRNA, partial cds
          Length = 1436

 Score =  323 bits (163), Expect = 2e-85
 Identities = 261/293 (89%), Gaps = 3/293 (1%)
 Strand = Plus / Minus

                                                                        
Query: 68   gtgatcatcagtattaaatcgaggagccgcactgtcttgtgtacacatctcagcaacagc 127
            |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 1436 gtgatcatcagtattaaatcaaggagccgcaccgtcttgtgtacacatctcagcatcagc 1377

                                                                        
Query: 128  aaaatggccgcacagaaaaaccaagaaccacataccgcccagtactcacgcacacgctac 187
            |||||||  |||||  |||||||| ||| |  || ||||||||   ||| ||||  ||||
Sbjct: 1376 aaaatggatgcacaagaaaaccaacaacgatgtatcgcccagt---cacacacattctac 1320

                                                                        
Query: 188  atctttctaagatttaccttctaggggttagatagtctctgcttcagcacctcaacgaaa 247
            ||||||| |||||||    |||| |||||||||| |||||||||||||||||||||||||
Sbjct: 1319 atctttcgaagatttcatctctaagggttagataatctctgcttcagcacctcaacgaaa 1260

                                                                        
Query: 248  tccttcctcggaacctcctcttcctggttagccgtgatgtccttcagcttcaccttccca 307
            || ||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||| 
Sbjct: 1259 tctttccttggaacctcctcttcctggttagccctaatgtccttcagtttcaccttcccg 1200

                                                                 
Query: 308  tccctcaactcggactcgccgaccagcaccatccacgggatgcccgtctgcgt 360
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1199 tccctcaactcggactcgccgaccagcaccatccacgggatgcctgtctgcgt 1147
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>gb|AY105543.1| Zea mays PCO101093 mRNA sequence
          Length = 2424

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 320  gactcgccgaccagcaccatccacgggatgc 350
            ||||||||||| |||||||||||||| ||||
Sbjct: 2016 gactcgccgactagcaccatccacggaatgc 1986
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>emb|Z97056.1|HS434P1 Human DNA sequence from clone RP3-434P1 on chromosome 22, complete
            sequence
          Length = 124990

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 286  gtccttcagcttcaccttccca 307
            ||||||||||||||||||||||
Sbjct: 5790 gtccttcagcttcaccttccca 5811
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>emb|AL157838.24| Human DNA sequence from clone RP4-724E16 on chromosome 20q13.12-13.32
             Contains the ZNF217 gene for zinc finger protein 217, the
             gene for a novel protein (FLJ14031) and two CpG islands,
             complete sequence
          Length = 128871

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 286   gtccttcagcttcaccttccca 307
             ||||||||||||||||||||||
Sbjct: 78687 gtccttcagcttcaccttccca 78708
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>gb|AF312915.1|AF312915 Homo sapiens chromosome 20 clones 97 and 127, complete sequence
          Length = 121143

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 286    gtccttcagcttcaccttccca 307
              ||||||||||||||||||||||
Sbjct: 112423 gtccttcagcttcaccttccca 112444
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>ref|XM_493924.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1485

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                        
Query: 259  aacctcctcttcctggttagccgtgatgtccttcagcttcaccttcccatccctcaactc 318
            |||||||||||||||| | || |  | || ||||||||||||||| |||   || |  ||
Sbjct: 1434 aacctcctcttcctggctggctgccaagttcttcagcttcacctttccactgcttatttc 1375

                                             
Query: 319  ggactcgccgaccagcaccatccacgggatgcc 351
             ||||| || ||||||||||||||||| |||||
Sbjct: 1374 agactcaccaaccagcaccatccacggaatgcc 1342
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>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
             complete sequence
          Length = 164898

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 75/93 (80%)
 Strand = Plus / Plus

                                                                         
Query: 259   aacctcctcttcctggttagccgtgatgtccttcagcttcaccttcccatccctcaactc 318
             |||||||||||||||| | || |  | || ||||||||||||||| |||   || |  ||
Sbjct: 62615 aacctcctcttcctggctggctgccaagttcttcagcttcacctttccactgcttatttc 62674

                                              
Query: 319   ggactcgccgaccagcaccatccacgggatgcc 351
              ||||| || ||||||||||||||||| |||||
Sbjct: 62675 agactcaccaaccagcaccatccacggaatgcc 62707
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 75/93 (80%)
 Strand = Plus / Plus

                                                                           
Query: 259     aacctcctcttcctggttagccgtgatgtccttcagcttcaccttcccatccctcaactc 318
               |||||||||||||||| | || |  | || ||||||||||||||| |||   || |  ||
Sbjct: 2868004 aacctcctcttcctggctggctgccaagttcttcagcttcacctttccactgcttatttc 2868063

                                                
Query: 319     ggactcgccgaccagcaccatccacgggatgcc 351
                ||||| || ||||||||||||||||| |||||
Sbjct: 2868064 agactcaccaaccagcaccatccacggaatgcc 2868096
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>gb|AC004846.2|AC004846 Homo sapiens PAC clone RP4-647C14 from 14q24.3, complete sequence
          Length = 154616

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 295   cttcaccttcccatccctcaa 315
             |||||||||||||||||||||
Sbjct: 38755 cttcaccttcccatccctcaa 38775
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>emb|Z85984.1|OSHISRS O.sativa mRNA histidyl tRNA synthetase
          Length = 1723

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                        
Query: 259  aacctcctcttcctggttagccgtgatgtccttcagcttcaccttcccatccctcaactc 318
            |||||||||||||||| | || |  | || ||||||||||||||| |||   || |  ||
Sbjct: 1503 aacctcctcttcctggctggctgccaagttcttcagcttcacctttccactgcttatttc 1444

                                             
Query: 319  ggactcgccgaccagcaccatccacgggatgcc 351
             ||||| || ||||||||||||||||| |||||
Sbjct: 1443 agactcaccaaccagcaccatccacggaatgcc 1411
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>dbj|AK099789.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097A18, full
            insert sequence
          Length = 2644

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                        
Query: 259  aacctcctcttcctggttagccgtgatgtccttcagcttcaccttcccatccctcaactc 318
            |||||||||||||||| | || |  | || ||||||||||||||| |||   || |  ||
Sbjct: 2393 aacctcctcttcctggctggctgccaagttcttcagcttcacctttccactgcttatttc 2334

                                             
Query: 319  ggactcgccgaccagcaccatccacgggatgcc 351
             ||||| || ||||||||||||||||| |||||
Sbjct: 2333 agactcaccaaccagcaccatccacggaatgcc 2301
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>emb|BX855612.9| Zebrafish DNA sequence from clone CH211-198C22 in linkage group 19,
              complete sequence
          Length = 212866

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     aacaattcaaacaatttgtga 71
              |||||||||||||||||||||
Sbjct: 172738 aacaattcaaacaatttgtga 172718
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>dbj|AK059520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C05, full
            insert sequence
          Length = 2028

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                        
Query: 259  aacctcctcttcctggttagccgtgatgtccttcagcttcaccttcccatccctcaactc 318
            |||||||||||||||| | || |  | || ||||||||||||||| |||   || |  ||
Sbjct: 1763 aacctcctcttcctggctggctgccaagttcttcagcttcacctttccactgcttatttc 1704

                                             
Query: 319  ggactcgccgaccagcaccatccacgggatgcc 351
             ||||| || ||||||||||||||||| |||||
Sbjct: 1703 agactcaccaaccagcaccatccacggaatgcc 1671
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>gb|AC127593.4| Mus musculus BAC clone RP23-390G15 from chromosome 10, complete
             sequence
          Length = 214856

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   tccttcagcttcaccttccc 306
             ||||||||||||||||||||
Sbjct: 68611 tccttcagcttcaccttccc 68630
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>gb|AC124371.2| Mus musculus BAC clone RP24-556P1 from chromosome 8, complete sequence
          Length = 158228

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   tccttcagcttcaccttccc 306
             ||||||||||||||||||||
Sbjct: 13355 tccttcagcttcaccttccc 13336
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>emb|BX005414.13| Zebrafish DNA sequence from clone DKEY-21C19 in linkage group 23,
              complete sequence
          Length = 236036

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     acaattcaaacaatttgtga 71
              ||||||||||||||||||||
Sbjct: 133284 acaattcaaacaatttgtga 133303
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>gb|AC097357.2| Homo sapiens chromosome 3 clone RP11-137N22, complete sequence
          Length = 162277

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   agatagtctctgcttcagca 236
             ||||||||||||||||||||
Sbjct: 94218 agatagtctctgcttcagca 94199
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 50      caacaattcaaacaatttgtgatcatca 77
               |||||||||||||| ||| |||||||||
Sbjct: 1790198 caacaattcaaacactttttgatcatca 1790225
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 50      caacaattcaaacaatttgtgatcatca 77
               |||||||||||||| ||| |||||||||
Sbjct: 1716238 caacaattcaaacactttttgatcatca 1716265
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 50      caacaattcaaacaatttgtgatcatca 77
               |||||||||||||| ||| |||||||||
Sbjct: 1813035 caacaattcaaacactttttgatcatca 1813062
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>gb|AC107642.14| Mus musculus chromosome 8, clone RP23-54J1, complete sequence
          Length = 218180

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   tccttcagcttcaccttccc 306
             ||||||||||||||||||||
Sbjct: 75321 tccttcagcttcaccttccc 75340
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>dbj|AK119742.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G05, full
            insert sequence
          Length = 3764

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  ctcggactcgccgaccagca 335
            ||||||||||||||||||||
Sbjct: 1982 ctcggactcgccgaccagca 1963
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>emb|AL445643.12| Human DNA sequence from clone RP11-350D23 on chromosome 9, complete
              sequence
          Length = 188693

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    atctcagcaacagcaaaatg 133
              ||||||||||||||||||||
Sbjct: 107264 atctcagcaacagcaaaatg 107283
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 50      caacaattcaaacaatttgtgatcatca 77
               |||||||||||||| ||| |||||||||
Sbjct: 1853166 caacaattcaaacactttttgatcatca 1853193
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>gb|DQ058411.1| Apostichopus japonicus ferritin mRNA, complete cds
          Length = 883

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 277 agccgtgatgtccttcagcttcac 300
           ||||||||||||||| ||||||||
Sbjct: 392 agccgtgatgtccttgagcttcac 369
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>gb|AF125461.1| Caenorhabditis elegans cosmid Y8A9A, complete sequence
          Length = 15663

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   gcaacaattcaaacaatttg 68
            ||||||||||||||||||||
Sbjct: 6390 gcaacaattcaaacaatttg 6409
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>dbj|AB053352.1| Staphylococcus aureus gene for DnaE, complete cds
          Length = 3633

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 50   caacaattcaaacaatttgtgatcatca 77
            |||||||||||||| ||| |||||||||
Sbjct: 1902 caacaattcaaacactttttgatcatca 1875


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,346,842
Number of Sequences: 3902068
Number of extensions: 3346842
Number of successful extensions: 66116
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66002
Number of HSP's gapped (non-prelim): 105
length of query: 360
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 338
effective length of database: 17,147,199,772
effective search space: 5795753522936
effective search space used: 5795753522936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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