ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX323012.5| Zebrafish DNA sequence from clone DKEYP-46F3, co... 44 0.33
2gb|AC147680.4| Canis Familiaris, clone XX-10H12, complete sequence 42 1.3
3gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, com... 42 1.3
4gb|AC152827.4| Mus musculus BAC clone RP23-60K23 from chromosome... 42 1.3
5gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, co... 42 1.3
6emb|AL596265.12| Mouse DNA sequence from clone RP23-134O19 on ch... 42 1.3
7gb|AC103624.9| Mus musculus chromosome 5, clone RP24-258B22, com... 40 5.2
8gb|AC152353.1| Pan troglodytes chromosome X clone RP43-001P01 ma... 40 5.2
9gb|AC166972.8| Mus musculus chromosome 3, clone RP24-330F18, com... 40 5.2
10gb|AC161226.7| Mus musculus chromosome 3, clone RP23-298B8, comp... 40 5.2
11gb|AC158301.4| Mus musculus chromosome 5, clone RP24-71D19, comp... 40 5.2
12gb|AC074034.19| Homo sapiens Xp BAC RP11-143E20 (Roswell Park Ca... 40 5.2
13gb|AC141639.3| Mus musculus BAC clone RP23-354J7 from chromosome... 40 5.2
14emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c2... 40 5.2
15gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosom... 40 5.2
16gb|AC003081.1| Homo sapiens BAC clone CTB-9H2 from 7, complete s... 40 5.2
17emb|AL592444.18| Human DNA sequence from clone RP11-178P20 on ch... 40 5.2
18gb|AC159460.9| Mus musculus chromosome 15, clone RP24-306N20, co... 40 5.2
19gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, comp... 40 5.2
20gb|DQ393814.1| Saccharomyces cerevisiae isolate UCD935 methionin... 40 5.2
21gb|DQ393813.1| Saccharomyces cerevisiae isolate UCD934 methionin... 40 5.2
22gb|DQ393812.1| Saccharomyces cerevisiae isolate UCD940 methionin... 40 5.2
23gb|DQ393811.1| Saccharomyces cerevisiae isolate UCD939 methionin... 40 5.2
24gb|DQ393810.1| Saccharomyces cerevisiae isolate UCD932 methionin... 40 5.2
25gb|AC008840.5| Homo sapiens chromosome 5 clone CTD-2154I11, comp... 40 5.2
26gb|AC117725.23| Mus musculus chromosome 5, clone RP24-439K18, co... 40 5.2
27gb|AC008511.6|AC008511 Homo sapiens chromosome 5 clone CTC-454D3... 40 5.2
28gb|U18839.1|SCE9747 Saccharomyces cerevisiae chromosome V cosmid... 40 5.2
29gb|AC103893.2| Papio anubis clone RP41-216H1, complete sequence 40 5.2
30gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thali... 40 5.2
31gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7,... 40 5.2
32emb|X07238.1|SCDP8 Yeast delta-P8 gene promoter and 5' region 40 5.2
33dbj|D13798.1|SYNP8GSH Unidentified cloning vector pGSR1518-4d DN... 40 5.2
34gb|AC174722.2| Mus musculus chromosome 5, clone wi1-1220K19, com... 40 5.2
35gb|DQ331679.1| Synthetic construct Saccharomyces cerevisiae clon... 40 5.2
36gb|AC003691.1|AC003691 Human Chromosome 11q23 PAC clone pDJ254e1... 40 5.2
37gb|U32508.1|SCU32508 Saccharomyces cerevisiae N5-methyltetrahydr... 40 5.2
38gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, comp... 40 5.2
39gb|U15099.1|SCU15099 Saccharomyces cerevisiae cobalamin-independ... 40 5.2
40dbj|AB027295.1| Physarum polycephalum mitochondrial DNA, complet... 40 5.2 
>emb|BX323012.5| Zebrafish DNA sequence from clone DKEYP-46F3, complete sequence
          Length = 175238

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 329   gaaataattgtaacccttcatcattttcag 358
             |||||||||||| ||||| |||||||||||
Sbjct: 48959 gaaataattgtatcccttgatcattttcag 48988
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>gb|AC147680.4| Canis Familiaris, clone XX-10H12, complete sequence
          Length = 214979

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    atacaatgactgaaatgcaaa 163
              |||||||||||||||||||||
Sbjct: 153729 atacaatgactgaaatgcaaa 153709
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>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence
          Length = 240406

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 135    tcacacaaatacaatgactga 155
              |||||||||||||||||||||
Sbjct: 233161 tcacacaaatacaatgactga 233141
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>gb|AC152827.4| Mus musculus BAC clone RP23-60K23 from chromosome 12, complete sequence
          Length = 195066

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    ccatcatcacacaaatacaat 149
              |||||||||||||||||||||
Sbjct: 111070 ccatcatcacacaaatacaat 111050
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>gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, complete sequence
          Length = 190380

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   tcacacaaatacaatgactga 155
             |||||||||||||||||||||
Sbjct: 47730 tcacacaaatacaatgactga 47710
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>emb|AL596265.12| Mouse DNA sequence from clone RP23-134O19 on chromosome 12, complete
              sequence
          Length = 205332

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    ccatcatcacacaaatacaat 149
              |||||||||||||||||||||
Sbjct: 195464 ccatcatcacacaaatacaat 195484
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>gb|AC103624.9| Mus musculus chromosome 5, clone RP24-258B22, complete sequence
          Length = 172330

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    catctccagtgccagatgat 225
              ||||||||||||||||||||
Sbjct: 164777 catctccagtgccagatgat 164758
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>gb|AC152353.1| Pan troglodytes chromosome X clone RP43-001P01 map human ortholog
             p22.31, complete sequence
          Length = 218326

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 155   aaatgcaaacagagaattaaagaagagt 182
             ||||||||| ||| ||||||||||||||
Sbjct: 30835 aaatgcaaaaagaaaattaaagaagagt 30808
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>gb|AC166972.8| Mus musculus chromosome 3, clone RP24-330F18, complete sequence
          Length = 142975

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aaatgcaaacagagaattaa 174
             ||||||||||||||||||||
Sbjct: 43356 aaatgcaaacagagaattaa 43375
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>gb|AC161226.7| Mus musculus chromosome 3, clone RP23-298B8, complete sequence
          Length = 200107

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aaatgcaaacagagaattaa 174
             ||||||||||||||||||||
Sbjct: 15809 aaatgcaaacagagaattaa 15828
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>gb|AC158301.4| Mus musculus chromosome 5, clone RP24-71D19, complete sequence
          Length = 234479

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 286   cttgcttttggtttcgagtgtatc 309
             ||||||||| ||||||||||||||
Sbjct: 93212 cttgctttttgtttcgagtgtatc 93235
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>gb|AC074034.19| Homo sapiens Xp BAC RP11-143E20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 111461

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 155   aaatgcaaacagagaattaaagaagagt 182
             ||||||||| ||| ||||||||||||||
Sbjct: 42168 aaatgcaaaaagaaaattaaagaagagt 42141
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>gb|AC141639.3| Mus musculus BAC clone RP23-354J7 from chromosome 18, complete sequence
          Length = 216358

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    gaaacgaagacaataaatac 73
             ||||||||||||||||||||
Sbjct: 98606 gaaacgaagacaataaatac 98625
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>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
          Length = 243542

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    ttgcttttggtttcgagtgt 306
              ||||||||||||||||||||
Sbjct: 130489 ttgcttttggtttcgagtgt 130470
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>gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosome 8, complete sequence
          Length = 174928

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ctgcagccgtgctgctcaag 259
             ||||||||||||||||||||
Sbjct: 13080 ctgcagccgtgctgctcaag 13061
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>gb|AC003081.1| Homo sapiens BAC clone CTB-9H2 from 7, complete sequence
          Length = 149566

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  acacaaatacaatgactgaa 156
            ||||||||||||||||||||
Sbjct: 7497 acacaaatacaatgactgaa 7516
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>emb|AL592444.18| Human DNA sequence from clone RP11-178P20 on chromosome 6 Contains the
             5' end of the TCP10 gene for t-complex 10 (mouse) and a
             CpG island, complete sequence
          Length = 74279

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   actgaaatgcaaacagagaa 170
             ||||||||||||||||||||
Sbjct: 37968 actgaaatgcaaacagagaa 37987
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>gb|AC159460.9| Mus musculus chromosome 15, clone RP24-306N20, complete sequence
          Length = 184875

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   aatgactgaaatgcaaacag 166
             ||||||||||||||||||||
Sbjct: 88941 aatgactgaaatgcaaacag 88922
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>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence
          Length = 168708

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  ttcaacatctccagtgccag 220
            ||||||||||||||||||||
Sbjct: 8547 ttcaacatctccagtgccag 8566
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>gb|DQ393814.1| Saccharomyces cerevisiae isolate UCD935 methionine synthase (MET6)
           gene, complete cds
          Length = 2862

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 599 caaacagagaattaaagaag 618
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>gb|DQ393813.1| Saccharomyces cerevisiae isolate UCD934 methionine synthase (MET6)
           gene, complete cds
          Length = 2862

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 599 caaacagagaattaaagaag 618
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>gb|DQ393812.1| Saccharomyces cerevisiae isolate UCD940 methionine synthase (MET6)
           gene, complete cds
          Length = 2862

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 599 caaacagagaattaaagaag 618
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>gb|DQ393811.1| Saccharomyces cerevisiae isolate UCD939 methionine synthase (MET6)
           gene, complete cds
          Length = 2862

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 599 caaacagagaattaaagaag 618
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>gb|DQ393810.1| Saccharomyces cerevisiae isolate UCD932 methionine synthase (MET6)
           gene, complete cds
          Length = 2862

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 599 caaacagagaattaaagaag 618
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>gb|AC008840.5| Homo sapiens chromosome 5 clone CTD-2154I11, complete sequence
          Length = 126746

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    ttcaacatctccagtgccag 220
              ||||||||||||||||||||
Sbjct: 111991 ttcaacatctccagtgccag 112010
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>gb|AC117725.23| Mus musculus chromosome 5, clone RP24-439K18, complete sequence
          Length = 180960

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 286    cttgcttttggtttcgagtgtatc 309
              ||||||||| ||||||||||||||
Sbjct: 171110 cttgctttttgtttcgagtgtatc 171133
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>gb|AC008511.6|AC008511 Homo sapiens chromosome 5 clone CTC-454D3, complete sequence
          Length = 160770

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   ttcaacatctccagtgccag 220
             ||||||||||||||||||||
Sbjct: 22749 ttcaacatctccagtgccag 22730
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>gb|U18839.1|SCE9747 Saccharomyces cerevisiae chromosome V cosmids 9747, 8198, 9781, and
             lambda clones 3612 and 6052
          Length = 64797

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   caaacagagaattaaagaag 179
             ||||||||||||||||||||
Sbjct: 32110 caaacagagaattaaagaag 32091
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>gb|AC103893.2| Papio anubis clone RP41-216H1, complete sequence
          Length = 155255

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 68     aaatactagtacatgattattcagagca 95
              ||||||| |||||||| |||||||||||
Sbjct: 114144 aaatacttgtacatgactattcagagca 114171
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>gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 127462

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aaatactagtacatgattat 87
             ||||||||||||||||||||
Sbjct: 85289 aaatactagtacatgattat 85308
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>gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7, complete sequence
          Length = 201762

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    acacaaatacaatgactgaa 156
              ||||||||||||||||||||
Sbjct: 125903 acacaaatacaatgactgaa 125922
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>emb|X07238.1|SCDP8 Yeast delta-P8 gene promoter and 5' region
          Length = 1845

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 426 caaacagagaattaaagaag 445
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>dbj|D13798.1|SYNP8GSH Unidentified cloning vector pGSR1518-4d DNA, promoter region
          Length = 1890

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 431 caaacagagaattaaagaag 450
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>gb|AC174722.2| Mus musculus chromosome 5, clone wi1-1220K19, complete sequence
          Length = 33943

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   catctccagtgccagatgat 225
             ||||||||||||||||||||
Sbjct: 33263 catctccagtgccagatgat 33282
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>gb|DQ331679.1| Synthetic construct Saccharomyces cerevisiae clone FLH202663.01X
           MET6 gene, complete sequence
          Length = 2304

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 41  caaacagagaattaaagaag 60
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>gb|AC003691.1|AC003691 Human Chromosome 11q23 PAC clone pDJ254e13, complete sequence
          Length = 65020

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   ttcaacatctccagtgccag 220
             ||||||||||||||||||||
Sbjct: 36453 ttcaacatctccagtgccag 36472
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>gb|U32508.1|SCU32508 Saccharomyces cerevisiae N5-methyltetrahydrofolate homocysteine
            methyltransferase (MET6) gene and aspartyl protease gene,
            complete cds
          Length = 5163

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  caaacagagaattaaagaag 179
            ||||||||||||||||||||
Sbjct: 2588 caaacagagaattaaagaag 2607
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>gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, complete sequence
          Length = 178620

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    ctgcagccgtgctgctcaag 259
              ||||||||||||||||||||
Sbjct: 148113 ctgcagccgtgctgctcaag 148094
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>gb|U15099.1|SCU15099 Saccharomyces cerevisiae cobalamin-independent methionine synthase
           (MET6) gene, complete cds
          Length = 2986

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 caaacagagaattaaagaag 179
           ||||||||||||||||||||
Sbjct: 562 caaacagagaattaaagaag 581
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>dbj|AB027295.1| Physarum polycephalum mitochondrial DNA, complete genome
          Length = 62862

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    aagacaataaatactagtacatga 83
             ||||||||||||||||||| ||||
Sbjct: 44397 aagacaataaatactagtatatga 44420


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,498,273
Number of Sequences: 3902068
Number of extensions: 3498273
Number of successful extensions: 66022
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65960
Number of HSP's gapped (non-prelim): 62
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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