ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECO1_YEAST (P43605) N-acetyltransferase ECO1 (EC 2.3.1.-) (Estab... 31 0.87
2OPSD_PETMA (Q98980) Rhodopsin 28 4.3
3TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 28 4.3
4IPMK_RAT (Q99NI4) Inositol polyphosphate multikinase (EC 2.7.1.1... 28 4.3
5IPMK_MOUSE (Q7TT16) Inositol polyphosphate multikinase (EC 2.7.1... 28 4.3
6OPSD_LAMJA (P22671) Rhodopsin 28 7.4
7OPSG_ORYLA (P87366) Green-sensitive opsin (Green cone photorecep... 28 7.4
8OPSG4_BRARE (Q9W6A6) Green-sensitive opsin-4 (Green cone photore... 28 7.4
9OPSG3_BRARE (Q8AYM7) Green-sensitive opsin-3 (Green cone photore... 28 7.4
10SPORA_IPOBA (P10917) Sporamin A precursor 27 9.7
11OP1S2_BRARE (Q9W6A8) Opsin-1, short-wave-sensitive 2 (Blue-sensi... 27 9.7
12DIAP3_MOUSE (Q9Z207) Protein diaphanous homolog 3 (Diaphanous-re... 27 9.7
13OPSB_ANOCA (P51471) Blue-sensitive opsin (Blue photoreceptor pig... 27 9.7
14NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exch... 27 9.7
15OPSG2_BRARE (Q8AYM8) Green-sensitive opsin-2 (Green cone photore... 27 9.7
16OPSG1_BRARE (Q9W6A5) Green-sensitive opsin-1 (Green cone photore... 27 9.7
17HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin) 27 9.7

>ECO1_YEAST (P43605) N-acetyltransferase ECO1 (EC 2.3.1.-) (Establishment of|
           cohesion protein 1) (Chromosome transmission fidelity
           protein 7)
          Length = 281

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 50  NNNSQLNKKMKCSY-KWT*HNLMIDDKAMHDKMYTLRFAG 166
           NN S+ NK +KC   + +  +  I+D+A+H+K +TL+  G
Sbjct: 24  NNGSKSNKIVKCDKCEMSYSSTSIEDRAIHEKYHTLQLHG 63



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>OPSD_PETMA (Q98980) Rhodopsin|
          Length = 353

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSVN 180
           L+ WS  L  GM  S GPD +++N
Sbjct: 172 LVGWSRYLPEGMQCSCGPDYYTLN 195



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>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 438

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 32  TTLTHTNNNSQLNKKMKCSYKWT*HNLMIDDKAMHDKMYTL 154
           TTL H NNN  +N +      +T H ++I     H K+ T+
Sbjct: 346 TTLPHPNNNETINIRF-----YTSHKVLITKNTKHKKLKTI 381



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>IPMK_RAT (Q99NI4) Inositol polyphosphate multikinase (EC 2.7.1.151)|
           (Inositol 1,3,4,6-tetrakisphosphate 5-kinase)
          Length = 396

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 259 IRLPGLRVDSPPLPRLLG 312
           +R PG   DSPP+PRLLG
Sbjct: 10  LRPPGSTGDSPPVPRLLG 27



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>IPMK_MOUSE (Q7TT16) Inositol polyphosphate multikinase (EC 2.7.1.151)|
           (Inositol 1,3,4,6-tetrakisphosphate 5-kinase)
          Length = 396

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 259 IRLPGLRVDSPPLPRLLG 312
           +R PG   DSPP+PRLLG
Sbjct: 10  LRPPGSTGDSPPVPRLLG 27



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>OPSD_LAMJA (P22671) Rhodopsin|
          Length = 353

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSVN 180
           L+ WS  +  GM  S GPD +++N
Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195



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>OPSG_ORYLA (P87366) Green-sensitive opsin (Green cone photoreceptor pigment)|
           (KFH-G)
          Length = 345

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSV----NGVDCSLQI*ACTFC 138
           L+ WS  +  G+ +S GPD +++    N     + + +C FC
Sbjct: 173 LVGWSRYIPEGIQVSCGPDYYTLAPGFNNESFVMYMFSCHFC 214



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>OPSG4_BRARE (Q9W6A6) Green-sensitive opsin-4 (Green cone photoreceptor pigment|
           4) (Opsin-1, medium-wave-sensitive 4) (Opsin RH2-4)
          Length = 349

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSVN 180
           L+ WS  +  GM  S GPD +++N
Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195



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>OPSG3_BRARE (Q8AYM7) Green-sensitive opsin-3 (Green cone photoreceptor pigment|
           3) (Opsin-1, medium-wave-sensitive 3) (Opsin RH2-3)
          Length = 349

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSVN 180
           L+ WS  +  GM  S GPD +++N
Sbjct: 172 LVGWSRYIPEGMQCSCGPDYYTLN 195



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>SPORA_IPOBA (P10917) Sporamin A precursor|
          Length = 219

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 233 LLKAGMDISFGPDQFSVNGVDCSLQI*ACTFC 138
           LLKAG  +S   +QF +  VD +L     T+C
Sbjct: 149 LLKAGEFVSDNSNQFKIEVVDANLNFYKLTYC 180



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>OP1S2_BRARE (Q9W6A8) Opsin-1, short-wave-sensitive 2 (Blue-sensitive opsin)|
           (Blue cone photoreceptor pigment) (Opsin SWS-2)
          Length = 354

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSVNGV--DCSLQI*ACTFCHALPY 123
           L+ WS  +  G+  S GPD ++ N    + S  +    FC A+P+
Sbjct: 179 LLGWSRYIPEGLQCSCGPDWYTTNNKFNNESYVMFLFCFCFAVPF 223



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>DIAP3_MOUSE (Q9Z207) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3) (mDIA2) (p134mDIA2)
          Length = 1171

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 178 PFTEN*SGPKL-MSIPAFSSSLHHISSTIRLPGLRVDSPPLPRL 306
           P+      PKL ++I   +  +    ++IR+PG + + PPLP L
Sbjct: 29  PYEPGEKRPKLHLNIRTLTDDMLDKFASIRIPGSKKERPPLPHL 72



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>OPSB_ANOCA (P51471) Blue-sensitive opsin (Blue photoreceptor pigment) (RH2|
           opsin)
          Length = 355

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSVN 180
           L+ WS  +  GM  S GPD +++N
Sbjct: 172 LLGWSRYIPEGMQCSCGPDYYTLN 195



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>NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4)|
           (NHE-4)
          Length = 529

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 254 LLIWWSELLKAGMDISFGPDQFSVNGV 174
           ++IWW+ L++  + I+    QF+ +GV
Sbjct: 383 VIIWWAGLMRGAVSIALAFKQFTYSGV 409



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>OPSG2_BRARE (Q8AYM8) Green-sensitive opsin-2 (Green cone photoreceptor pigment|
           2) (Opsin-1, medium-wave-sensitive 2) (Opsin RH2-2)
          Length = 349

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSV----NGVDCSLQI*ACTFC 138
           L  WS  +  GM  S GPD +++    N     L + +C FC
Sbjct: 172 LFGWSRYIPEGMQTSCGPDYYTLNPEFNNESYVLYMFSCHFC 213



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>OPSG1_BRARE (Q9W6A5) Green-sensitive opsin-1 (Green cone photoreceptor pigment|
           1) (Opsin-1, medium-wave-sensitive 1) (Opsin RH2-1)
          Length = 349

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 251 LIWWSELLKAGMDISFGPDQFSVN 180
           L  WS  L  GM  S GPD +++N
Sbjct: 172 LFGWSRYLPEGMQTSCGPDYYTLN 195



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>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)|
          Length = 3133

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 257 PSGSPVSESTALRFLDCWDL 316
           PSG  +SES+AL F D W L
Sbjct: 394 PSGGGMSESSALIFADSWKL 413


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,349,470
Number of Sequences: 219361
Number of extensions: 856400
Number of successful extensions: 1959
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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