Clone Name | rbastl50h05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 | 61 | 1e-09 | 2 | UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 | 56 | 4e-08 | 3 | UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 | 56 | 4e-08 | 4 | RL18_BURPS (Q63Q27) 50S ribosomal protein L18 | 30 | 3.5 | 5 | RL18_BURMA (Q62GM1) 50S ribosomal protein L18 | 30 | 3.5 | 6 | EAAT_ONCVO (Q25605) Excitatory amino acid transporter (Sodium-de... | 28 | 7.9 | 7 | EAA1_CAEEL (Q10901) Excitatory amino acid transporter (Sodium-de... | 28 | 7.9 |
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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 61.2 bits (147), Expect = 1e-09 Identities = 28/29 (96%), Positives = 28/29 (96%) Frame = -2 Query: 446 YRRHLDIGVACED*DENDVDIPLVSVYFR 360 YRRHLDIGVACED DENDVDIPLVSVYFR Sbjct: 1025 YRRHLDIGVACEDEDENDVDIPLVSVYFR 1053
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 56.2 bits (134), Expect = 4e-08 Identities = 25/29 (86%), Positives = 27/29 (93%) Frame = -2 Query: 446 YRRHLDIGVACED*DENDVDIPLVSVYFR 360 YRRHLD+ VACED D+NDVDIPLVSVYFR Sbjct: 1023 YRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 56.2 bits (134), Expect = 4e-08 Identities = 25/29 (86%), Positives = 27/29 (93%) Frame = -2 Query: 446 YRRHLDIGVACED*DENDVDIPLVSVYFR 360 YRRHLD+ VACED D+NDVDIPLVSVYFR Sbjct: 1023 YRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>RL18_BURPS (Q63Q27) 50S ribosomal protein L18| Length = 121 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -3 Query: 223 QAAALALIDLSYHGYLKMFSPCGTLVL 143 Q A LA+ + H Y ++FSPCGT VL Sbjct: 22 QVARLAVHRTNTHIYAQVFSPCGTKVL 48
>RL18_BURMA (Q62GM1) 50S ribosomal protein L18| Length = 121 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -3 Query: 223 QAAALALIDLSYHGYLKMFSPCGTLVL 143 Q A LA+ + H Y ++FSPCGT VL Sbjct: 22 QVARLAVHRTNTHIYAQVFSPCGTKVL 48
>EAAT_ONCVO (Q25605) Excitatory amino acid transporter (Sodium-dependent| glutamate/ aspartate transporter) Length = 492 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = +1 Query: 115 LNATNEQIAAGPVYHKERTS*GNHDMIDRSARERRLDYIRDSAKL-VFESRPEDDD 279 +N + + AG VYH + HD + + R + + +L V+ S P DD+ Sbjct: 433 INVLGDAMGAGIVYHYSKADLDAHDRLAATTRSHSIAMNDEKRQLAVYNSLPTDDE 488
>EAA1_CAEEL (Q10901) Excitatory amino acid transporter (Sodium-dependent| glutamate/ aspartate transporter) Length = 503 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = +1 Query: 115 LNATNEQIAAGPVYHKERTS*GNHDMIDRSARERRLDYIRDSAKL-VFESRPEDDD 279 +N + + AG VYH + HD + + R + + +L V+ S P DD+ Sbjct: 444 INVLGDAMGAGIVYHYSKADLDAHDRLAATTRSHSIAMNDEKRQLAVYNSLPTDDE 499 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,981,125 Number of Sequences: 219361 Number of extensions: 1087747 Number of successful extensions: 2001 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1970 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2001 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)