ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 61 1e-09
2UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 56 4e-08
3UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 56 4e-08
4RL18_BURPS (Q63Q27) 50S ribosomal protein L18 30 3.5
5RL18_BURMA (Q62GM1) 50S ribosomal protein L18 30 3.5
6EAAT_ONCVO (Q25605) Excitatory amino acid transporter (Sodium-de... 28 7.9
7EAA1_CAEEL (Q10901) Excitatory amino acid transporter (Sodium-de... 28 7.9

>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 28/29 (96%), Positives = 28/29 (96%)
 Frame = -2

Query: 446  YRRHLDIGVACED*DENDVDIPLVSVYFR 360
            YRRHLDIGVACED DENDVDIPLVSVYFR
Sbjct: 1025 YRRHLDIGVACEDEDENDVDIPLVSVYFR 1053



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>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = -2

Query: 446  YRRHLDIGVACED*DENDVDIPLVSVYFR 360
            YRRHLD+ VACED D+NDVDIPLVSVYFR
Sbjct: 1023 YRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = -2

Query: 446  YRRHLDIGVACED*DENDVDIPLVSVYFR 360
            YRRHLD+ VACED D+NDVDIPLVSVYFR
Sbjct: 1023 YRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>RL18_BURPS (Q63Q27) 50S ribosomal protein L18|
          Length = 121

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 223 QAAALALIDLSYHGYLKMFSPCGTLVL 143
           Q A LA+   + H Y ++FSPCGT VL
Sbjct: 22  QVARLAVHRTNTHIYAQVFSPCGTKVL 48



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>RL18_BURMA (Q62GM1) 50S ribosomal protein L18|
          Length = 121

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 223 QAAALALIDLSYHGYLKMFSPCGTLVL 143
           Q A LA+   + H Y ++FSPCGT VL
Sbjct: 22  QVARLAVHRTNTHIYAQVFSPCGTKVL 48



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>EAAT_ONCVO (Q25605) Excitatory amino acid transporter (Sodium-dependent|
           glutamate/ aspartate transporter)
          Length = 492

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 115 LNATNEQIAAGPVYHKERTS*GNHDMIDRSARERRLDYIRDSAKL-VFESRPEDDD 279
           +N   + + AG VYH  +     HD +  + R   +    +  +L V+ S P DD+
Sbjct: 433 INVLGDAMGAGIVYHYSKADLDAHDRLAATTRSHSIAMNDEKRQLAVYNSLPTDDE 488



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>EAA1_CAEEL (Q10901) Excitatory amino acid transporter (Sodium-dependent|
           glutamate/ aspartate transporter)
          Length = 503

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 115 LNATNEQIAAGPVYHKERTS*GNHDMIDRSARERRLDYIRDSAKL-VFESRPEDDD 279
           +N   + + AG VYH  +     HD +  + R   +    +  +L V+ S P DD+
Sbjct: 444 INVLGDAMGAGIVYHYSKADLDAHDRLAATTRSHSIAMNDEKRQLAVYNSLPTDDE 499


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,981,125
Number of Sequences: 219361
Number of extensions: 1087747
Number of successful extensions: 2001
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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