ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl50h04 |
|---|---|
| Clone Library Name | barley_pub |
>FRU_DROME (Q8IN81) Sex determination protein fruitless| Length = 955 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 131 CTEKQFPLQIGSVICSRQRGAPWRSTSHLPGHATTPSCPSSVAKAPP 271 C K L + ++ CSRQ+ + H P H + CP+ A +PP Sbjct: 712 CEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDCPAEAAYSPP 758
>SYA_STRMU (Q8CWY0) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 872 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = -3 Query: 187 SLPAADDRPYLKRELLLSAYQYGRSVAMGHN*V*FCPFLYTFLFLICKASDFYFP 23 +LP + R Y+ R LL A +GR + + PFLY + + K + Y+P Sbjct: 295 ALPGNEGRGYVLRRLLRRAVMHGRRLGINE------PFLYKLVPTVGKIMESYYP 343
>SODM_MYCSZ (P53650) Superoxide dismutase [Mn] (EC 1.15.1.1) (Fragment)| Length = 138 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/74 (29%), Positives = 29/74 (39%) Frame = +1 Query: 205 HVTSARSRNDSVVSLFSGKSPSKHSGCLTRFNSDRAASTLSSITVS*LNLSRSLAARTEH 384 H T + ND+V L RA SSI +S NL+ +LA H Sbjct: 6 HATYVKGANDAVAKL----------------EEARAQEDFSSILLSEKNLAFNLAGHVNH 49 Query: 385 AKGWKVLHPCHGER 426 WK L P G++ Sbjct: 50 TIWWKNLSPNGGDK 63
>UNC18_CAEEL (P34815) Putative acetylcholine regulator unc-18 (Uncoordinated| protein 18) Length = 591 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -2 Query: 308 LSLLNLVRHPECLEGLLPLKRDTTESLRDLADVTWTAKELLFACCR*QTLSEEGI 144 +SL +V H + + PLK+ S ++ V A +L +CC+ + EEGI Sbjct: 1 MSLKQIVGHKLLNDVIRPLKKGDGRSAWNVLIVDTLAMRMLSSCCKMHNIMEEGI 55
>DHH1_SCHPO (Q09181) Putative ATP-dependent RNA helicase ste13 (EC 3.6.1.-)| Length = 485 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +1 Query: 43 LYKSRKEMCTETGKITLSCDPSLHFFHTGMH*EAIP---SSDRVCHLQQAK 186 LY+ E+ TE I S DPSL+ F G + P S+D+V QQAK Sbjct: 393 LYRIENELGTEIQPIPPSIDPSLYVFPNGDYQIPRPLTASADQVLAAQQAK 443
>VG48_SHV21 (Q01033) Hypothetical gene 48 protein| Length = 797 Score = 30.4 bits (67), Expect = 2.4 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = -2 Query: 299 LNLVRHPECLEGLLPLKRDTTESLRDLADVTWTAKELLFAC-CR*QTLSEEG 147 LNL+ EC +GL L R E ++D DV + +E+ + C R L EEG Sbjct: 77 LNLI---ECTQGLKFLIRSLYEKIKDQCDVKSSIREIFYDCKARLLLLLEEG 125
>SODM_MYCMR (P53646) Superoxide dismutase [Mn] (EC 1.15.1.1) (Fragment)| Length = 138 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/74 (25%), Positives = 30/74 (40%) Frame = +1 Query: 205 HVTSARSRNDSVVSLFSGKSPSKHSGCLTRFNSDRAASTLSSITVS*LNLSRSLAARTEH 384 H T + ND+V L ++ H S+I ++ NL+ +LA H Sbjct: 6 HATYVKGANDAVTKLEEARAKEDH----------------STILLNEKNLAFNLAGHVNH 49 Query: 385 AKGWKVLHPCHGER 426 WK L P G++ Sbjct: 50 TIWWKNLSPNGGDK 63
>SODF_MYCTU (P17670) Superoxide dismutase [Fe] (EC 1.15.1.1)| Length = 207 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/74 (25%), Positives = 30/74 (40%) Frame = +1 Query: 205 HVTSARSRNDSVVSLFSGKSPSKHSGCLTRFNSDRAASTLSSITVS*LNLSRSLAARTEH 384 H T + ND+V L ++ H S+I ++ NL+ +LA H Sbjct: 33 HATYVKGANDAVAKLEEARAKEDH----------------SAILLNEKNLAFNLAGHVNH 76 Query: 385 AKGWKVLHPCHGER 426 WK L P G++ Sbjct: 77 TIWWKNLSPNGGDK 90
>SODF_MYCBO (Q7TVI9) Superoxide dismutase [Fe] (EC 1.15.1.1)| Length = 207 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/74 (25%), Positives = 30/74 (40%) Frame = +1 Query: 205 HVTSARSRNDSVVSLFSGKSPSKHSGCLTRFNSDRAASTLSSITVS*LNLSRSLAARTEH 384 H T + ND+V L ++ H S+I ++ NL+ +LA H Sbjct: 33 HATYVKGANDAVAKLEEARAKEDH----------------SAILLNEKNLAFNLAGHVNH 76 Query: 385 AKGWKVLHPCHGER 426 WK L P G++ Sbjct: 77 TIWWKNLSPNGGDK 90
>SODM_MYCKA (P50912) Superoxide dismutase [Mn] (EC 1.15.1.1) (Fragment)| Length = 163 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/74 (25%), Positives = 30/74 (40%) Frame = +1 Query: 205 HVTSARSRNDSVVSLFSGKSPSKHSGCLTRFNSDRAASTLSSITVS*LNLSRSLAARTEH 384 H T + ND+V L ++ H S+I ++ NL+ +LA H Sbjct: 7 HATYVKGANDAVAKLEEARAKEDH----------------SAILLNEKNLAFNLAGHVNH 50 Query: 385 AKGWKVLHPCHGER 426 WK L P G++ Sbjct: 51 TIWWKNLSPNGGDK 64
>SYA_STRP8 (Q8P0E6) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 872 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = -3 Query: 187 SLPAADDRPYLKRELLLSAYQYGRSVAMGHN*V*FCPFLYTFLFLICKASDFYFP 23 +LP + R Y+ R LL A +GR + + FLY + + + + Y+P Sbjct: 295 ALPGNEGRGYVLRRLLRRAVMHGRRLGINET------FLYKLVLTVGQIMESYYP 343
>EPD_CYPCA (P38528) Ependymin precursor (EPD)| Length = 215 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 473 CLVRACLVTVAWMSSSLSPWH 411 C+V +CL VAW SS+ P H Sbjct: 8 CVVFSCLCAVAWASSNRQPCH 28
>PDLI5_HUMAN (Q96HC4) PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like| PDZ and LIM domains protein) Length = 595 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +2 Query: 149 PLQIGSVICSRQRGAPWRSTSHLPGHATTPS--CPSSVAKAPPSILDVS 289 P GSV + P S++ P HATT S PS VA P + S Sbjct: 128 PRPFGSVSSPKVTSIPSPSSAFTPAHATTSSHASPSPVAAVTPPLFAAS 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,204,221 Number of Sequences: 219361 Number of extensions: 1547939 Number of successful extensions: 4504 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4503 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
