ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464258.1| Oryza sativa (japonica cultivar-group), mRNA 153 6e-34
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
3dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
4dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
5gb|AY105487.1| Zea mays PCO096212 mRNA sequence 64 4e-07
6gb|AC136471.1| Solanum demissum chromosome 11 BAC PGEC561 genomi... 46 0.10
7gb|AC160244.11| Mus musculus chromosome 5, clone RP24-212G3, com... 42 1.6
8gb|AF238380.3| Homo sapiens chromosome X multiple clones map p11... 42 1.6
9gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome... 42 1.6
10emb|AL359632.9| Human DNA sequence from clone RP11-269P11 on chr... 42 1.6
11gb|AC163999.3| Mus musculus chromosome 15, clone RP24-387E19, co... 42 1.6
12gb|AC157551.6| Mus musculus chromosome 5, clone RP24-270K7, comp... 42 1.6
13gb|AC151840.5| Mus musculus BAC clone RP23-150L19 from chromosom... 42 1.6
14gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707... 42 1.6
15emb|BX279524.5| Zebrafish DNA sequence from clone DKEY-35H11 in ... 42 1.6
16gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108... 42 1.6
17emb|BX255969.8| Zebrafish DNA sequence from clone DKEY-67M7 in l... 42 1.6
18gb|AC102183.6| Mus musculus chromosome 15, clone RP24-146N2, com... 42 1.6
19gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, comp... 40 6.4
20gb|AC150257.12| Aedes aegypti, clone XX-97O18, complete sequence 40 6.4
21gb|AC161187.5| Mus musculus chromosome 5, clone RP23-297H22, com... 40 6.4
22gb|BC000719.2| Homo sapiens ATG4 autophagy related 4 homolog B (... 40 6.4
23gb|AC162447.5| Mus musculus chromosome 1, clone RP24-84B18, comp... 40 6.4
24gb|AC110251.11| Mus musculus chromosome 5, clone RP23-263O8, com... 40 6.4
25gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, com... 40 6.4
26emb|CR548612.1| Paramecium tetraurelia macronuclear largest chro... 40 6.4
27emb|AL080168.1|HSM800687 Homo sapiens mRNA; cDNA DKFZp434C151 (f... 40 6.4
28emb|AJ504652.1|HSA504652 Homo sapiens mRNA for autophagin-1 (AUT... 40 6.4
29emb|BX511087.12| Zebrafish DNA sequence from clone DKEY-261O7 in... 40 6.4
30gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, com... 40 6.4
31emb|BX648007.1|HSM808153 Homo sapiens mRNA; cDNA DKFZp686G0859 (... 40 6.4
32gb|AC087516.12| Homo sapiens chromosome 15, clone RP11-475A13, c... 40 6.4
33emb|CR624104.1| full-length cDNA clone CS0DC015YD08 of Neuroblas... 40 6.4
34dbj|AK125277.1| Homo sapiens cDNA FLJ43287 fis, clone MESAN2006563 40 6.4
35gb|AE005885.1| Caulobacter crescentus CB15 section 211 of 359 of... 40 6.4
36emb|CR620961.1| full-length cDNA clone CS0DC011YD14 of Neuroblas... 40 6.4
37emb|CR619883.1| full-length cDNA clone CS0DJ013YC13 of T cells (... 40 6.4
38emb|CR617577.1| full-length cDNA clone CS0DF028YI14 of Fetal bra... 40 6.4
39emb|CR616109.1| full-length cDNA clone CS0DM010YC22 of Fetal liv... 40 6.4
40emb|CR610655.1| full-length cDNA clone CS0DC016YI13 of Neuroblas... 40 6.4
41emb|CR609647.1| full-length cDNA clone CS0DC009YA17 of Neuroblas... 40 6.4
42emb|CR607129.1| full-length cDNA clone CS0DJ005YD20 of T cells (... 40 6.4
43emb|CR607059.1| full-length cDNA clone CS0DI059YM07 of Placenta ... 40 6.4
44emb|CR605500.1| full-length cDNA clone CS0DL008YI19 of B cells (... 40 6.4
45emb|CR605379.1| full-length cDNA clone CS0DC023YP06 of Neuroblas... 40 6.4
46emb|CR604848.1| full-length cDNA clone CS0DC016YC24 of Neuroblas... 40 6.4
47emb|CR603562.1| full-length cDNA clone CS0DD009YD23 of Neuroblas... 40 6.4
48emb|CR600855.1| full-length cDNA clone CS0DK009YM20 of HeLa cell... 40 6.4
49emb|CR596663.1| full-length cDNA clone CS0DI045YA22 of Placenta ... 40 6.4
50emb|CR595851.1| full-length cDNA clone CS0DI067YB19 of Placenta ... 40 6.4
51dbj|AK027763.1| Homo sapiens cDNA FLJ14857 fis, clone PLACE1001185 40 6.4
52dbj|AK027462.1| Homo sapiens cDNA FLJ14556 fis, clone NT2RM2001867 40 6.4
53dbj|AK027332.1| Homo sapiens cDNA FLJ14426 fis, clone HEMBA1006108 40 6.4
54emb|CR592790.1| full-length cDNA clone CS0DJ012YL17 of T cells (... 40 6.4
55emb|CR591872.1| full-length cDNA clone CS0DI021YN16 of Placenta ... 40 6.4
56emb|CR591579.1| full-length cDNA clone CS0DB006YD13 of Neuroblas... 40 6.4
57gb|AC152893.4| Saimiri boliviensis boliviensis clone CH254-211C3... 40 6.4
58gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, com... 40 6.4
59gb|AC097513.2| Homo sapiens BAC clone RP11-419E3 from 4, complet... 40 6.4
60gb|AC092270.2| Homo sapiens chromosome 5 clone CTC-213G1, comple... 40 6.4
61ref|NM_013325.4| Homo sapiens ATG4 autophagy related 4 homolog B... 40 6.4
62ref|NM_178326.2| Homo sapiens ATG4 autophagy related 4 homolog B... 40 6.4
63ref|XR_001447.1| PREDICTED: Homo sapiens similar to APG4 autopha... 40 6.4
64dbj|AB023160.2| Homo sapiens mRNA for KIAA0943 protein, partial cds 40 6.4
65gb|AC133781.4| Homo sapiens BAC clone RP11-756K13 from 2, comple... 40 6.4
66gb|AC133528.4| Homo sapiens BAC clone RP11-367H1 from 2, complet... 40 6.4
67gb|AC106731.3| Homo sapiens chromosome 5 clone CTD-2216D16, comp... 40 6.4
68gb|AC114730.5| Homo sapiens BAC clone RP13-925E23 from 2, comple... 40 6.4
69dbj|AB066215.1| Homo sapiens mRNA for Apg4B, complete cds 40 6.4
70gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M1... 40 6.4
71gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, co... 40 6.4
72emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 ... 40 6.4
73emb|AL669924.9| Human DNA sequence from clone XXbac-2L19 on chro... 40 6.4 
>ref|XM_464258.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2961

 Score =  153 bits (77), Expect = 6e-34
 Identities = 224/273 (82%)
 Strand = Plus / Minus

                                                                        
Query: 168  tcatctgcagcaggcaaagaggagctccttggcggtccacgtcacatctgccaggtcacg 227
            |||||| ||||| || || ||||||||||| || ||||| ||||| ||||| || ||  |
Sbjct: 2961 tcatctacagcatgcgaaaaggagctcctttgcagtccatgtcacttctgcaagatcttg 2902

                                                                        
Query: 228  caacgactccgtcgtgtccctcttcagtggcaaaagcccctccaagcattctggatgtct 287
            ||| |||||    |||||  ||||||||||  |||||  |||||| ||||||||||||||
Sbjct: 2901 caatgactctactgtgtctttcttcagtgggtaaagcttctccaaacattctggatgtct 2842

                                                                        
Query: 288  cacaagattcaacagtgatagagcagcgagcaccctttcttccataactgtgtcatagct 347
            |||||| ||||||||||| || | ||| |||||||| ||||||| |||| ||||||||||
Sbjct: 2841 cacaaggttcaacagtgacagtgaagcaagcaccctctcttccaaaactctgtcatagct 2782

                                                                        
Query: 348  caacctatctagaagcttagcagcgagaacggagcacgccaaaggctggaaagtgttgca 407
             |  ||||||| ||||||||  || |||| |||||| || ||||||||||| ||||||||
Sbjct: 2781 taggctatctacaagcttagtcgcaagaatggagcaagctaaaggctggaacgtgttgca 2722

                                             
Query: 408  tccatgccatggggagagggagctgctcatcca 440
             || |||   |||||||| ||||||||||||||
Sbjct: 2721 cccgtgcagcggggagagtgagctgctcatcca 2689
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  125 bits (63), Expect = 1e-25
 Identities = 138/163 (84%)
 Strand = Plus / Minus

                                                                           
Query: 278     ctggatgtctcacaagattcaacagtgatagagcagcgagcaccctttcttccataactg 337
               |||||||||||||||| ||||||||||| || | ||| |||||||| ||||||| |||| 
Sbjct: 3699089 ctggatgtctcacaaggttcaacagtgacagtgaagcaagcaccctctcttccaaaactc 3699030

                                                                           
Query: 338     tgtcatagctcaacctatctagaagcttagcagcgagaacggagcacgccaaaggctgga 397
               |||||||||| |  ||||||| ||||||||  || |||| |||||| || ||||||||||
Sbjct: 3699029 tgtcatagcttaggctatctacaagcttagtcgcaagaatggagcaagctaaaggctgga 3698970

                                                          
Query: 398     aagtgttgcatccatgccatggggagagggagctgctcatcca 440
               | |||||||| || |||   |||||||| ||||||||||||||
Sbjct: 3698969 acgtgttgcacccgtgcagcggggagagtgagctgctcatcca 3698927



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                    
Query: 166     tgtcatctgcagcaggcaaagaggagctccttggcggtccacgtcacatctgc 218
               |||||||| ||||| || || ||||||||||| || ||||| ||||| |||||
Sbjct: 3699526 tgtcatctacagcatgcgaaaaggagctcctttgcagtccatgtcacttctgc 3699474
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>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G09
          Length = 140067

 Score =  125 bits (63), Expect = 1e-25
 Identities = 138/163 (84%)
 Strand = Plus / Minus

                                                                         
Query: 278   ctggatgtctcacaagattcaacagtgatagagcagcgagcaccctttcttccataactg 337
             |||||||||||||||| ||||||||||| || | ||| |||||||| ||||||| |||| 
Sbjct: 39406 ctggatgtctcacaaggttcaacagtgacagtgaagcaagcaccctctcttccaaaactc 39347

                                                                         
Query: 338   tgtcatagctcaacctatctagaagcttagcagcgagaacggagcacgccaaaggctgga 397
             |||||||||| |  ||||||| ||||||||  || |||| |||||| || ||||||||||
Sbjct: 39346 tgtcatagcttaggctatctacaagcttagtcgcaagaatggagcaagctaaaggctgga 39287

                                                        
Query: 398   aagtgttgcatccatgccatggggagagggagctgctcatcca 440
             | |||||||| || |||   |||||||| ||||||||||||||
Sbjct: 39286 acgtgttgcacccgtgcagcggggagagtgagctgctcatcca 39244



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 166   tgtcatctgcagcaggcaaagaggagctccttggcggtccacgtcacatctgc 218
             |||||||| ||||| || || ||||||||||| || ||||| ||||| |||||
Sbjct: 39843 tgtcatctacagcatgcgaaaaggagctcctttgcagtccatgtcacttctgc 39791
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>dbj|AP005804.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0085K21
          Length = 180714

 Score =  125 bits (63), Expect = 1e-25
 Identities = 138/163 (84%)
 Strand = Plus / Minus

                                                                          
Query: 278    ctggatgtctcacaagattcaacagtgatagagcagcgagcaccctttcttccataactg 337
              |||||||||||||||| ||||||||||| || | ||| |||||||| ||||||| |||| 
Sbjct: 180379 ctggatgtctcacaaggttcaacagtgacagtgaagcaagcaccctctcttccaaaactc 180320

                                                                          
Query: 338    tgtcatagctcaacctatctagaagcttagcagcgagaacggagcacgccaaaggctgga 397
              |||||||||| |  ||||||| ||||||||  || |||| |||||| || ||||||||||
Sbjct: 180319 tgtcatagcttaggctatctacaagcttagtcgcaagaatggagcaagctaaaggctgga 180260

                                                         
Query: 398    aagtgttgcatccatgccatggggagagggagctgctcatcca 440
              | |||||||| || |||   |||||||| ||||||||||||||
Sbjct: 180259 acgtgttgcacccgtgcagcggggagagtgagctgctcatcca 180217
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>gb|AY105487.1| Zea mays PCO096212 mRNA sequence
          Length = 800

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 152/192 (79%)
 Strand = Plus / Minus

                                                                       
Query: 267 ctccaagcattctggatgtctcacaagattcaacagtgatagagcagcgagcaccctttc 326
           ||||| ||||||||| |||||||| |  ||||  || || || | |||||||||||| ||
Sbjct: 769 ctccatgcattctgggtgtctcacgacgttcagaagcgacagcgaagcgagcaccctctc 710

                                                                       
Query: 327 ttccataactgtgtcatagctcaacctatctagaagcttagcagcgagaacggagcacgc 386
            ||||  ||| |||| |||||||| || || | ||||||||  ||||| |||||||| ||
Sbjct: 709 ctccaggactctgtcgtagctcaagctgtccaaaagcttagacgcgaggacggagcatgc 650

                                                                       
Query: 387 caaaggctggaaagtgttgcatccatgccatggggagagggagctgctcatccacgctac 446
           ||  ||||||||   |||||||||  ||   || |||||||||||||||||||| || ||
Sbjct: 649 caggggctggaagtcgttgcatccgcgcagcggcgagagggagctgctcatccatgccac 590

                       
Query: 447 ggttacgaggca 458
           | | ||||||||
Sbjct: 589 gctgacgaggca 578
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>gb|AC136471.1| Solanum demissum chromosome 11 BAC PGEC561 genomic sequence, complete
              sequence
          Length = 123428

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 42     gctttacaaatcaagaaaagaaa 64
              |||||||||||||||||||||||
Sbjct: 102064 gctttacaaatcaagaaaagaaa 102086
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>gb|AC160244.11| Mus musculus chromosome 5, clone RP24-212G3, complete sequence
          Length = 150276

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 46     tacaaatcaagaaaagaaatg 66
              |||||||||||||||||||||
Sbjct: 149796 tacaaatcaagaaaagaaatg 149816
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>gb|AF238380.3| Homo sapiens chromosome X multiple clones map p11.23, complete sequence
          Length = 158698

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   gggtctgtcatctgcagcagg 181
             |||||||||||||||||||||
Sbjct: 66145 gggtctgtcatctgcagcagg 66125
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>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence
          Length = 195082

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 320    ccctttcttccataactgtgt 340
              |||||||||||||||||||||
Sbjct: 170194 ccctttcttccataactgtgt 170174
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>emb|AL359632.9| Human DNA sequence from clone RP11-269P11 on chromosome 9 Contains
            the 3' end of the MAPKAP1 gene for mitogen-activated
            protein kinase associated protein 1 and a CpG island,
            complete sequence
          Length = 95397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 172  ctgcagcaggcaaagaggagc 192
            |||||||||||||||||||||
Sbjct: 9844 ctgcagcaggcaaagaggagc 9864
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>gb|AC163999.3| Mus musculus chromosome 15, clone RP24-387E19, complete sequence
          Length = 163830

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 18    ttccaagggaaataaaaatctgagg 42
             |||||||||||||||||| ||||||
Sbjct: 13015 ttccaagggaaataaaaaactgagg 13039
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>gb|AC157551.6| Mus musculus chromosome 5, clone RP24-270K7, complete sequence
          Length = 171680

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     tacaaatcaagaaaagaaatg 66
              |||||||||||||||||||||
Sbjct: 108650 tacaaatcaagaaaagaaatg 108630
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>gb|AC151840.5| Mus musculus BAC clone RP23-150L19 from chromosome 18, complete
             sequence
          Length = 197898

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   ccctttcttccataactgtgt 340
             |||||||||||||||||||||
Sbjct: 49628 ccctttcttccataactgtgt 49608
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>gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707P17 map 15q21.2, complete
            sequence
          Length = 169077

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 54   aagaaaagaaatgtgtacaga 74
            |||||||||||||||||||||
Sbjct: 5663 aagaaaagaaatgtgtacaga 5643
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>emb|BX279524.5| Zebrafish DNA sequence from clone DKEY-35H11 in linkage group 11,
            complete sequence
          Length = 157440

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 287  tcacaagattcaacagtgata 307
            |||||||||||||||||||||
Sbjct: 9394 tcacaagattcaacagtgata 9374
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>gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108K3 map 15q21, complete sequence
          Length = 144714

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 54     aagaaaagaaatgtgtacaga 74
              |||||||||||||||||||||
Sbjct: 104417 aagaaaagaaatgtgtacaga 104397
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>emb|BX255969.8| Zebrafish DNA sequence from clone DKEY-67M7 in linkage group 11,
             complete sequence
          Length = 155717

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 287   tcacaagattcaacagtgata 307
             |||||||||||||||||||||
Sbjct: 43846 tcacaagattcaacagtgata 43826
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>gb|AC102183.6| Mus musculus chromosome 15, clone RP24-146N2, complete sequence
          Length = 148288

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 18     ttccaagggaaataaaaatctgagg 42
              |||||||||||||||||| ||||||
Sbjct: 128341 ttccaagggaaataaaaaactgagg 128365
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>gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, complete sequence
          Length = 244565

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 46     tacaaatcaagaaaagaaatgtgt 69
              |||||| |||||||||||||||||
Sbjct: 159797 tacaaaacaagaaaagaaatgtgt 159774
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>gb|AC150257.12| Aedes aegypti, clone XX-97O18, complete sequence
          Length = 124122

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tatgtgttccaagggaaata 31
             ||||||||||||||||||||
Sbjct: 29901 tatgtgttccaagggaaata 29920
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>gb|AC161187.5| Mus musculus chromosome 5, clone RP23-297H22, complete sequence
          Length = 171367

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    aacagtgatagagcagcgag 317
              ||||||||||||||||||||
Sbjct: 161974 aacagtgatagagcagcgag 161955
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>gb|BC000719.2| Homo sapiens ATG4 autophagy related 4 homolog B (S. cerevisiae),
           transcript variant 1, mRNA (cDNA clone MGC:1353
           IMAGE:3504267), complete cds
          Length = 2803

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 489 ggagctccttggcggtccac 508
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>gb|AC162447.5| Mus musculus chromosome 1, clone RP24-84B18, complete sequence
          Length = 217720

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    cttcagtggcaaaagcccct 268
              ||||||||||||||||||||
Sbjct: 196741 cttcagtggcaaaagcccct 196760
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>gb|AC110251.11| Mus musculus chromosome 5, clone RP23-263O8, complete sequence
          Length = 197946

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    aacagtgatagagcagcgag 317
              ||||||||||||||||||||
Sbjct: 104255 aacagtgatagagcagcgag 104236
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>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence
          Length = 264425

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     tacaaatcaagaaaagaaatgtgt 69
              |||||| |||||||||||||||||
Sbjct: 193086 tacaaaacaagaaaagaaatgtgt 193109
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>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence
          Length = 984602

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    atgtctcacaagattcaaca 301
              ||||||||||||||||||||
Sbjct: 295870 atgtctcacaagattcaaca 295889
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>emb|AL080168.1|HSM800687 Homo sapiens mRNA; cDNA DKFZp434C151 (from clone DKFZp434C151)
          Length = 1660

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 586 ggagctccttggcggtccac 605
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>emb|AJ504652.1|HSA504652 Homo sapiens mRNA for autophagin-1 (AUTL1 gene)
          Length = 1198

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 488 ggagctccttggcggtccac 507
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>emb|BX511087.12| Zebrafish DNA sequence from clone DKEY-261O7 in linkage group 17,
              complete sequence
          Length = 184012

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     aaatctgaggctttacaaat 52
              ||||||||||||||||||||
Sbjct: 175529 aaatctgaggctttacaaat 175548
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>gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, complete sequence
          Length = 154928

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    tgttccaagggaaataaaaatctg 39
             |||| |||||||||||||||||||
Sbjct: 39148 tgttacaagggaaataaaaatctg 39171
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>emb|BX648007.1|HSM808153 Homo sapiens mRNA; cDNA DKFZp686G0859 (from clone DKFZp686G0859)
          Length = 2436

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 566 ggagctccttggcggtccac 585
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>gb|AC087516.12| Homo sapiens chromosome 15, clone RP11-475A13, complete sequence
          Length = 187299

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     gaaataaaaatctgaggctt 45
              ||||||||||||||||||||
Sbjct: 117296 gaaataaaaatctgaggctt 117277
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>emb|CR624104.1| full-length cDNA clone CS0DC015YD08 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1504

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 502 ggagctccttggcggtccac 521
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>dbj|AK125277.1| Homo sapiens cDNA FLJ43287 fis, clone MESAN2006563
          Length = 3319

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  ggagctccttggcggtccac 207
            ||||||||||||||||||||
Sbjct: 1009 ggagctccttggcggtccac 1028
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>gb|AE005885.1| Caulobacter crescentus CB15 section 211 of 359 of the complete genome
          Length = 11024

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 380  agcacgccaaaggctggaaa 399
            ||||||||||||||||||||
Sbjct: 6070 agcacgccaaaggctggaaa 6089
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>emb|CR620961.1| full-length cDNA clone CS0DC011YD14 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1503

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR619883.1| full-length cDNA clone CS0DJ013YC13 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1581

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 527 ggagctccttggcggtccac 546
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>emb|CR617577.1| full-length cDNA clone CS0DF028YI14 of Fetal brain of Homo sapiens
           (human)
          Length = 1519

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR616109.1| full-length cDNA clone CS0DM010YC22 of Fetal liver of Homo sapiens
           (human)
          Length = 1511

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR610655.1| full-length cDNA clone CS0DC016YI13 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1507

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR609647.1| full-length cDNA clone CS0DC009YA17 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1476

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR607129.1| full-length cDNA clone CS0DJ005YD20 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1573

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 543 ggagctccttggcggtccac 562
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>emb|CR607059.1| full-length cDNA clone CS0DI059YM07 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1511

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR605500.1| full-length cDNA clone CS0DL008YI19 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1502

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR605379.1| full-length cDNA clone CS0DC023YP06 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1579

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 533 ggagctccttggcggtccac 552
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>emb|CR604848.1| full-length cDNA clone CS0DC016YC24 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1566

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 538 ggagctccttggcggtccac 557
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>emb|CR603562.1| full-length cDNA clone CS0DD009YD23 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1482

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR600855.1| full-length cDNA clone CS0DK009YM20 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1512

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR596663.1| full-length cDNA clone CS0DI045YA22 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1504

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR595851.1| full-length cDNA clone CS0DI067YB19 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1514

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>dbj|AK027763.1| Homo sapiens cDNA FLJ14857 fis, clone PLACE1001185
          Length = 2827

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 518 ggagctccttggcggtccac 537
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>dbj|AK027462.1| Homo sapiens cDNA FLJ14556 fis, clone NT2RM2001867
          Length = 1598

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 498 ggagctccttggcggtccac 517
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>dbj|AK027332.1| Homo sapiens cDNA FLJ14426 fis, clone HEMBA1006108
          Length = 1151

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 451 ggagctccttggcggtccac 470
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>emb|CR592790.1| full-length cDNA clone CS0DJ012YL17 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1511

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR591872.1| full-length cDNA clone CS0DI021YN16 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1475

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>emb|CR591579.1| full-length cDNA clone CS0DB006YD13 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 1497

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 475 ggagctccttggcggtccac 494
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>gb|AC152893.4| Saimiri boliviensis boliviensis clone CH254-211C3, complete sequence
          Length = 122416

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     atgtgttccaagggaaataa 32
              ||||||||||||||||||||
Sbjct: 119535 atgtgttccaagggaaataa 119554
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>gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, complete sequence
          Length = 147280

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     caaatcaagaaaagaaatgt 67
              ||||||||||||||||||||
Sbjct: 122010 caaatcaagaaaagaaatgt 121991
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>gb|AC097513.2| Homo sapiens BAC clone RP11-419E3 from 4, complete sequence
          Length = 151389

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   acacttcttccatactggta 130
             ||||||||||||||||||||
Sbjct: 36353 acacttcttccatactggta 36334
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>gb|AC092270.2| Homo sapiens chromosome 5 clone CTC-213G1, complete sequence
          Length = 133708

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   ccaaaggctggaaagtgttg 405
             ||||||||||||||||||||
Sbjct: 52475 ccaaaggctggaaagtgttg 52494
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>ref|NM_013325.4| Homo sapiens ATG4 autophagy related 4 homolog B (S. cerevisiae)
           (ATG4B), transcript variant 1, mRNA
          Length = 2892

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 585 ggagctccttggcggtccac 604
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>ref|NM_178326.2| Homo sapiens ATG4 autophagy related 4 homolog B (S. cerevisiae)
           (ATG4B), transcript variant 2, mRNA
          Length = 2912

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 585 ggagctccttggcggtccac 604
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>ref|XR_001447.1| PREDICTED: Homo sapiens similar to APG4 autophagy 4 homolog B
           isoform b (LOC653202), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 746 ggagctccttggcggtccac 765
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>dbj|AB023160.2| Homo sapiens mRNA for KIAA0943 protein, partial cds
          Length = 2778

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 492 ggagctccttggcggtccac 511
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>gb|AC133781.4| Homo sapiens BAC clone RP11-756K13 from 2, complete sequence
          Length = 185571

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ggagctccttggcggtccac 207
             ||||||||||||||||||||
Sbjct: 76342 ggagctccttggcggtccac 76361
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>gb|AC133528.4| Homo sapiens BAC clone RP11-367H1 from 2, complete sequence
          Length = 151700

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   ggagctccttggcggtccac 207
             ||||||||||||||||||||
Sbjct: 52813 ggagctccttggcggtccac 52794
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>gb|AC106731.3| Homo sapiens chromosome 5 clone CTD-2216D16, complete sequence
          Length = 132722

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   ccctccaagcattctggatg 284
             ||||||||||||||||||||
Sbjct: 29047 ccctccaagcattctggatg 29028
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>gb|AC114730.5| Homo sapiens BAC clone RP13-925E23 from 2, complete sequence
          Length = 193894

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    ggagctccttggcggtccac 207
              ||||||||||||||||||||
Sbjct: 184817 ggagctccttggcggtccac 184798
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>dbj|AB066215.1| Homo sapiens mRNA for Apg4B, complete cds
          Length = 1179

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggagctccttggcggtccac 207
           ||||||||||||||||||||
Sbjct: 479 ggagctccttggcggtccac 498
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>gb|AC148186.3| Saimiri boliviensis boliviensis clone CH254-359M10, complete sequence
          Length = 189199

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    atgtgttccaagggaaataa 32
             ||||||||||||||||||||
Sbjct: 24260 atgtgttccaagggaaataa 24279
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>gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, complete sequence
          Length = 210509

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    cttcagtggcaaaagcccct 268
              ||||||||||||||||||||
Sbjct: 201095 cttcagtggcaaaagcccct 201076
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>emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 in linkage group 17,
              complete sequence
          Length = 154493

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aaatctgaggctttacaaat 52
              ||||||||||||||||||||
Sbjct: 122836 aaatctgaggctttacaaat 122817
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>emb|AL669924.9| Human DNA sequence from clone XXbac-2L19 on chromosome 6, complete
             sequence
          Length = 137345

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   ccctccaagcattctggatg 284
             ||||||||||||||||||||
Sbjct: 95357 ccctccaagcattctggatg 95338


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,198,901
Number of Sequences: 3902068
Number of extensions: 5198901
Number of successful extensions: 93345
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93209
Number of HSP's gapped (non-prelim): 134
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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