ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 125 1e-25
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
4dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
5dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
6gb|AY103740.1| Zea mays PCO120652 mRNA sequence 109 7e-21
7gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence 94 4e-16
8gb|AY109245.1| Zea mays PCO147899 mRNA sequence 92 2e-15
9gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
10gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
12dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
13dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
14dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
15dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
17gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomi... 44 0.35
18emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N... 44 0.35
19ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490... 42 1.4
20gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 1... 42 1.4
21gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cance... 42 1.4
22gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence 42 1.4
23emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BA... 42 1.4
24emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ... 42 1.4
25gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, co... 42 1.4
26gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, comple... 42 1.4
27gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, co... 42 1.4
28gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, co... 42 1.4
29gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, compl... 40 5.5
30gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
31gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
32gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome... 40 5.5
33ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM033... 40 5.5
34emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in... 40 5.5
35gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating... 40 5.5
36ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.5
37emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chr... 40 5.5
38emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 i... 40 5.5
39gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, compl... 40 5.5
40gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, compl... 40 5.5
41ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA 40 5.5
42gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone... 40 5.5
43dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
44gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete... 40 5.5
45gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, comple... 40 5.5
46gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ... 40 5.5
47emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chro... 40 5.5
48emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, co... 40 5.5
49dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 5.5
50dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:C... 40 5.5
51emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-8... 40 5.5
52dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 5.5 
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                        
Query: 339  ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 398
            ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 3052

                           
Query: 399  ggtcttgctccttat 413
            |||||||||||||||
Sbjct: 3051 ggtcttgctccttat 3037
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                            
Query: 339      ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 398
                ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 10020896

                               
Query: 399      ggtcttgctccttat 413
                |||||||||||||||
Sbjct: 10020897 ggtcttgctccttat 10020911
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                          
Query: 339    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 398
              ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 101178

                             
Query: 399    ggtcttgctccttat 413
              |||||||||||||||
Sbjct: 101179 ggtcttgctccttat 101193
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>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                         
Query: 339   ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 398
             ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 48453

                            
Query: 399   ggtcttgctccttat 413
             |||||||||||||||
Sbjct: 48454 ggtcttgctccttat 48468
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                          
Query: 339    ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 398
              ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 115389

                             
Query: 399    ggtcttgctccttat 413
              |||||||||||||||
Sbjct: 115390 ggtcttgctccttat 115404
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>gb|AY103740.1| Zea mays PCO120652 mRNA sequence
          Length = 1013

 Score =  109 bits (55), Expect = 7e-21
 Identities = 70/75 (93%)
 Strand = Plus / Minus

                                                                       
Query: 339 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 398
           ||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct: 631 ttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgcaattccctg 572

                          
Query: 399 ggtcttgctccttat 413
           |||||||||||||||
Sbjct: 571 ggtcttgctccttat 557
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>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence
          Length = 1032

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                       
Query: 339 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 398
           ||||||||| || ||||||||||| || |||||||| || ||||||||||||||||| ||
Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgcaattccctg 579

                          
Query: 399 ggtcttgctccttat 413
           |||||||||||||||
Sbjct: 578 ggtcttgctccttat 564
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>gb|AY109245.1| Zea mays PCO147899 mRNA sequence
          Length = 751

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                       
Query: 344 tgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtct 403
           ||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgcaattccttgggtct 652

                     
Query: 404 tgctccttat 413
           |||| |||||
Sbjct: 651 tgcttcttat 642
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                         
Query: 343   ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 402
             |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 16609

                    
Query: 403   ttgctcc 409
             || ||||
Sbjct: 16610 ttactcc 16616
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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                          
Query: 343    ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 402
              |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 166074

                     
Query: 403    ttgctcc 409
              || ||||
Sbjct: 166075 ttactcc 166081
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                           
Query: 343     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 402
               |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3648937

                      
Query: 403     ttgctcc 409
               || ||||
Sbjct: 3648938 ttactcc 3648944
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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
            insert sequence
          Length = 3332

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                        
Query: 343  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 402
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                   
Query: 403  ttgctcc 409
            || ||||
Sbjct: 2908 ttactcc 2902
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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
            insert sequence
          Length = 3332

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                        
Query: 343  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 402
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                   
Query: 403  ttgctcc 409
            || ||||
Sbjct: 2908 ttactcc 2902
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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
            insert sequence
          Length = 3363

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                        
Query: 343  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 402
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2940

                   
Query: 403  ttgctcc 409
            || ||||
Sbjct: 2939 ttactcc 2933
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>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full
            insert sequence
          Length = 1741

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                        
Query: 343  ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 402
            |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 1318

                   
Query: 403  ttgctcc 409
            || ||||
Sbjct: 1317 ttactcc 1311
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 60/67 (89%)
 Strand = Plus / Plus

                                                                           
Query: 343     ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 402
               |||||||||||||| |||||||| |||||||| || |||||||| || ||||||||||||
Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3657631

                      
Query: 403     ttgctcc 409
               || ||||
Sbjct: 3657632 ttactcc 3657638
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>gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomic sequence, complete
             sequence
          Length = 91755

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 304   ctacatgacacaattgcaacagattg 329
             |||||||| |||||||||||||||||
Sbjct: 20673 ctacatgagacaattgcaacagattg 20648
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>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains
              the SNAP91 gene for synaptosomal-associated protein, 91 kD
              homolog (mouse) (KIAA0656) and a CpG island, complete
              sequence
          Length = 167018

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 230    aatcttttgtacattataaaaa 251
              ||||||||||||||||||||||
Sbjct: 106168 aatcttttgtacattataaaaa 106189
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>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds
          Length = 3306

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 349  cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 408
            ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 2955 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 2896

                 
Query: 409  cttat 413
            |||||
Sbjct: 2895 cttat 2891
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>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the
            complete genome
          Length = 11901

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 93   gttttttgtcaaaaaaggcct 113
            |||||||||||||||||||||
Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
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>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51315

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   tcttctcatccctctctttaa 231
             |||||||||||||||||||||
Sbjct: 29023 tcttctcatccctctctttaa 29043
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>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence
          Length = 39112

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 34   cgaaatacagtatctcaatcc 54
            |||||||||||||||||||||
Sbjct: 5828 cgaaatacagtatctcaatcc 5808
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>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project)
          Length = 94319

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 349   cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 408
             ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 50562 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 50503

                  
Query: 409   cttat 413
             |||||
Sbjct: 50502 cttat 50498
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>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 349   cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 408
             ||||| || |||||||| || |||||||| |  || || ||||| ||||| |||||||||
Sbjct: 38627 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 38568

                  
Query: 409   cttat 413
             |||||
Sbjct: 38567 cttat 38563
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>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence
          Length = 101116

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   tcttcctcttctcatccctct 225
             |||||||||||||||||||||
Sbjct: 82774 tcttcctcttctcatccctct 82794
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>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence
          Length = 169579

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   cctcttctcatccctctcttt 229
             |||||||||||||||||||||
Sbjct: 41686 cctcttctcatccctctcttt 41706
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>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence
          Length = 170801

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 205  tcttcctcttctcatccctct 225
            |||||||||||||||||||||
Sbjct: 7996 tcttcctcttctcatccctct 8016
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>gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, complete sequence
          Length = 204424

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 308   atgacacaattgcaacagatt 328
             |||||||||||||||||||||
Sbjct: 73824 atgacacaattgcaacagatt 73844
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>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 atggaagggagttgggagag 137
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
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>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09,
              complete sequence
          Length = 167318

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    atcttttgtacattataaaa 250
              ||||||||||||||||||||
Sbjct: 157323 atcttttgtacattataaaa 157304
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>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12,
             complete sequence
          Length = 121293

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   atcttttgtacattataaaa 250
             ||||||||||||||||||||
Sbjct: 28118 atcttttgtacattataaaa 28099
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>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence
          Length = 209579

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   tcttcctcttctcatccctc 224
             ||||||||||||||||||||
Sbjct: 64584 tcttcctcttctcatccctc 64565
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>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA
          Length = 2949

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 364  gtaatcttgtctcccaagctgagtgcaattccttgggtcttgct 407
            |||||||||||||||||||| |  || || || |||||||||||
Sbjct: 2918 gtaatcttgtctcccaagctcaaggcgatcccctgggtcttgct 2875
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>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5, complete
              sequence
          Length = 135495

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    gtacattataaaaacatctt 257
              ||||||||||||||||||||
Sbjct: 118337 gtacattataaaaacatctt 118318
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>gb|BC048021.1| Xenopus laevis enzymatic glycosylation-regulating gene, mRNA (cDNA
            clone MGC:52826 IMAGE:4884583), complete cds
          Length = 3336

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  ttttgtacattataaaaaca 253
            ||||||||||||||||||||
Sbjct: 3216 ttttgtacattataaaaaca 3235
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>ref|XM_737168.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000048.02.0)
           partial mRNA
          Length = 1161

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 230 aatcttttgtacattataaaaaca 253
           |||||||||||||||| |||||||
Sbjct: 324 aatcttttgtacattagaaaaaca 347
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>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains
            the RPL21P2 gene for ribosomal protein L21 pseudogene 2
            and a novel gene, complete sequence
          Length = 72540

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 371  tgtctcccaagctgagtgca 390
            ||||||||||||||||||||
Sbjct: 6689 tgtctcccaagctgagtgca 6670
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>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10,
            complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  atggaagggagttgggagag 137
            ||||||||||||||||||||
Sbjct: 2324 atggaagggagttgggagag 2343
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>gb|AC094020.2| Homo sapiens chromosome 3 clone RP11-425J9, complete sequence
          Length = 194729

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     tcacatctattcttacacca 90
              ||||||||||||||||||||
Sbjct: 114772 tcacatctattcttacacca 114791
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>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   cccttctgcttgagggtaat 368
             ||||||||||||||||||||
Sbjct: 29210 cccttctgcttgagggtaat 29229
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>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 atggaagggagttgggagag 137
           ||||||||||||||||||||
Sbjct: 98  atggaagggagttgggagag 117
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>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381
           IMAGE:7410517), complete cds
          Length = 968

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 atggaagggagttgggagag 137
           ||||||||||||||||||||
Sbjct: 81  atggaagggagttgggagag 100
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 231      atcttttgtacattataaaa 250
                ||||||||||||||||||||
Sbjct: 17897369 atcttttgtacattataaaa 17897350
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>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence
          Length = 164051

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    tcttcctcttctcatccctc 224
              ||||||||||||||||||||
Sbjct: 129969 tcttcctcttctcatccctc 129950
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>gb|AC068284.5| Homo sapiens BAC clone RP11-473K18 from 2, complete sequence
          Length = 110512

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    acaaacttcacatctattct 83
             ||||||||||||||||||||
Sbjct: 22462 acaaacttcacatctattct 22481
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>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence
          Length = 89352

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   ctcccttctgcttgagggta 366
             ||||||||||||||||||||
Sbjct: 72452 ctcccttctgcttgagggta 72433
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>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete
            sequence
          Length = 97756

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  aatcttttgtacattataaa 249
            ||||||||||||||||||||
Sbjct: 6181 aatcttttgtacattataaa 6162
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>emb|BX322606.6| Zebrafish DNA sequence from clone DKEY-40F12, complete sequence
          Length = 240928

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   gtacattataaaaacatctt 257
             ||||||||||||||||||||
Sbjct: 72225 gtacattataaaaacatctt 72206
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>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence
          Length = 185588

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    cccttctgcttgagggtaat 368
              ||||||||||||||||||||
Sbjct: 134566 cccttctgcttgagggtaat 134585
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>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete
             sequence
          Length = 129610

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   tgtctcccaagctgagtgca 390
             ||||||||||||||||||||
Sbjct: 44905 tgtctcccaagctgagtgca 44886
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>emb|AL132857.4|CNS01DTS Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166862

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 235    tttgtacattataaaaacatcttt 258
              ||||||||||||||||||| ||||
Sbjct: 106494 tttgtacattataaaaacaacttt 106517
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>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene
           region, section 8/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 349 cccttctgcttgagggtaat 368
           ||||||||||||||||||||
Sbjct: 911 cccttctgcttgagggtaat 892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,089,316
Number of Sequences: 3902068
Number of extensions: 4089316
Number of successful extensions: 80477
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80283
Number of HSP's gapped (non-prelim): 194
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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