ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl50h02 |
|---|---|
| Clone Library Name | barley_pub |
>TRI66_MOUSE (Q924W6) Tripartite motif protein 66| Length = 1209 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -2 Query: 173 SGPVESHCIVHLQPALMVLCTDCDLIAIHS 84 SG +C +H Q L + C CD++ HS Sbjct: 58 SGDFALYCPLHTQEVLKLFCETCDVLTCHS 87
>TRI66_HUMAN (O15016) Tripartite motif protein 66| Length = 1214 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -2 Query: 170 GPVESHCIVHLQPALMVLCTDCDLIAIHSDHCPVIYTLHH 51 G +C +H Q L + C CD++ HS C V+ H Sbjct: 59 GDFTLYCPLHTQEVLKLFCETCDMLTCHS--CLVVEHKEH 96
>ETF2_VACCT (Q9JF93) Early transcription factor 82 kDa subunit (VETF large| subunit) Length = 710 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 253 DNTTHETVPWPRISQNMKCQ-CSPLVSMHLLPSLNGIKSMFSHTD 384 D T ETV W RI QN K + P++ +L P + I + F +D Sbjct: 359 DFTKVETVYWSRICQNTKNKNRKPIIINYLDPGMKKISNNFYRSD 403
>ETF2_VACCC (P20635) Early transcription factor 82 kDa subunit (VETF large| subunit) Length = 710 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 253 DNTTHETVPWPRISQNMKCQ-CSPLVSMHLLPSLNGIKSMFSHTD 384 D T ETV W RI QN K + P++ +L P + I + F +D Sbjct: 359 DFTKVETVYWSRICQNTKNKNRKPIIINYLDPGMKKISNNFYRSD 403
>ETF2_VACCA (O57220) Early transcription factor 82 kDa subunit (VETF large| subunit) Length = 710 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 253 DNTTHETVPWPRISQNMKCQ-CSPLVSMHLLPSLNGIKSMFSHTD 384 D T ETV W RI QN K + P++ +L P + I + F +D Sbjct: 359 DFTKVETVYWSRICQNTKNKNRKPIIINYLDPGMKKISNNFYRSD 403
>SLAP2_HUMAN (Q9H6Q3) Src-like-adapter 2 (Src-like adapter protein 2) (SLAP-2)| (Modulator of antigen receptor signaling) (MARS) Length = 260 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +2 Query: 110 RYTRPSMQAASVQYSEIQRDHFC-TRQVCIILEATNFSTNSIIKPNNIEITP 262 R T PS+QA YSE+ D C ++ C++ A I P ++ TP Sbjct: 162 RLTFPSLQALVDHYSELADDICCLLKEPCVLQRAGPLPGKDIPLPVTVQRTP 213
>YKO8_CAEEL (Q86DA7) Hypothetical protein C05B5.8| Length = 177 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -1 Query: 174 KWSR*ISLYCTLAACIDGLVYRLRFDSYTL*SLSCN 67 KWS+ ++ C L A I ++Y + F SY LS N Sbjct: 71 KWSQRVTFACVLIAIIRFMIYPVVFASYMASGLSRN 106
>ETF2_VARV (P33806) Early transcription factor 82 kDa subunit (VETF large| subunit) Length = 710 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 253 DNTTHETVPWPRISQNMKCQ-CSPLVSMHLLPSLNGIKSMFSHTD 384 D T ETV W RI QN K + P++ +L P + I + F +D Sbjct: 359 DFTKVETVYWSRICQNTKNKNRKPVIINYLDPGMKKISNNFYRSD 403
>ETF2_VACCV (P20636) Early transcription factor 82 kDa subunit (VETF large| subunit) Length = 710 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 253 DNTTHETVPWPRISQNMKCQ-CSPLVSMHLLPSLNGIKSMFSHTD 384 D T ETV W RI QN K + P++ +L P + I + F +D Sbjct: 359 DFTKVETVYWSRICQNTKNKNRKPIIINYLDPGMKKISNNFYKSD 403
>CYB_CANST (Q6ED58) Cytochrome b| Length = 384 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = -1 Query: 276 NSFVCGVISMLFGLIILFVEKFVASRMIQ 190 +S + GV++MLF ++ILFV FV +I+ Sbjct: 286 SSKIIGVLAMLFAILILFVLPFVDFSIIR 314
>UVSE_BACCR (Q9L4F0) UV DNA damage endonuclease (EC 3.-.-.-) (UV-endonuclease)| (UVED) Length = 317 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = +3 Query: 300 HEVPMFSVSEHAPP----PEPEWDQINVFT 377 HE+P++ +S P PE E+D I VFT Sbjct: 61 HEIPLYRLSSSIVPLATHPEVEFDYIGVFT 90
>MUTS_BRAJA (Q89VX1) DNA mismatch repair protein mutS| Length = 912 Score = 27.7 bits (60), Expect = 6.8 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Frame = +3 Query: 87 VYSYQIAVGTQDHQCRLQVYNTVRFNGTTFARGKSV-SSLKQQISQQIVLSNQIT*R*HH 263 V+ +++ G+ D +QV R KSV + L+ Q Q + Sbjct: 804 VFLHEVLPGSADRSYGIQVAKLAGLPPAVITRAKSVLAKLEAQDRGQTARA--------- 854 Query: 264 TRNCSMAQDFPKHEVPMFSVSEHAPPPEPE 353 +A D P VP + +E APP E E Sbjct: 855 -----LADDLPLFAVPSRAAAEAAPPSEAE 879
>ETF2_FOWPV (Q9J562) Early transcription factor 82 kDa subunit (VETF large| subunit) Length = 709 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 214 FLNK*YYQTK*HRDNTTHETVPWPRISQNMKCQ-CSPLVSMHLLPSLNGIKSMF 372 F+N+ + K D T ET+ W RI QN K + P++ L P + + F Sbjct: 343 FINRLFNTVKQSMDFTKIETIYWSRICQNTKDKNRKPVIISSLEPDMLKVSDNF 396
>MPRF_STAXY (Q93QY7) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 841 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = -1 Query: 288 PGPWNSFVCGVISMLFGLIILFVEKFVASRMIQTCLVQKWSR*ISLYCTLAACIDGLVYR 109 P PW + L ++ LF+ FV +I+ VQK R + +YCT+ + ++ V Sbjct: 161 PYPW-------VKWLMYVVALFLPIFVVFTIIKP--VQKTHRLLGVYCTIVSGVEWFVAA 211 Query: 108 L 106 L Sbjct: 212 L 212
>MSH4_HUMAN (O15457) MutS protein homolog 4| Length = 936 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +2 Query: 155 EIQRDHFCTRQVCIILEATNFSTNSIIKPNNIEI 256 E+Q ++C V +L+ F NS+ P +++I Sbjct: 268 EVQSKYYCLAAVAALLKYVEFIQNSVYAPKSLKI 301
>CDC25_SACKL (Q02342) Cell division control protein 25 (Fragment)| Length = 1095 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/85 (25%), Positives = 38/85 (44%) Frame = +2 Query: 23 SNPFFKGVRHDEGCKLQDSDQSV*LSNRSRYTRPSMQAASVQYSEIQRDHFCTRQVCIIL 202 +NPF +G + Q+SD S + + S+ S YS +DH R + Sbjct: 251 TNPFHQGYEYGSA---QNSDSSPVFDSSQQQANDSLGNRS--YSVPSKDHTSFRGFSVSS 305 Query: 203 EATNFSTNSIIKPNNIEITPHTKLF 277 +AT+ +++S K + HT+ F Sbjct: 306 KATSTASSSNAKHSITGKPSHTRTF 330
>MPRF_STAAR (Q6GH45) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 840 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -1 Query: 234 IILFVEKFVASRMIQTCLVQKWSR*ISLYCTLAACIDGL 118 + LF+ F+ M++ K +R + LYCTL +C++ L Sbjct: 172 VSLFLPLFIIYSMVRP--PDKNNRYVGLYCTLVSCVEWL 208
>MAA_ECOLI (P77791) Maltose O-acetyltransferase (EC 2.3.1.79) (Maltose| transacetylase) Length = 182 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -2 Query: 377 CENIDLIPFRLGRRCMLTNGEH 312 C +D+ P R+G CML G H Sbjct: 85 CVMLDVCPIRIGDNCMLAPGVH 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,026,489 Number of Sequences: 219361 Number of extensions: 1170121 Number of successful extensions: 3279 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3276 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
