ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO) 30 3.5
2BMP5_HUMAN (P22003) Bone morphogenetic protein 5 precursor (BMP-5) 29 4.5
3BEX1_RAT (Q3MKQ2) Protein BEX1 (Brain-expressed X-linked protein... 29 4.5
4BEX2_RAT (Q3MKQ1) Protein BEX2 (Brain-expressed X-linked protein... 29 4.5
5HSP78_CANAL (Q96UX5) Heat shock protein 78, mitochondrial precursor 29 5.9
6BEX1_MOUSE (Q9R224) Protein BEX1 (Brain-expressed X-linked prote... 29 5.9
7BEX2_MOUSE (Q9WTZ8) Protein BEX2 (Brain-expressed X-linked prote... 29 5.9
8EFG_GLOVI (Q7NEF2) Elongation factor G (EF-G) 28 7.7

>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)|
          Length = 477

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 194 IRTPPSRRLAPAEASCTHQQALGHWQALQA 283
           ++ PPS  L     +C  Q  +GHWQ L +
Sbjct: 403 LKEPPSHCLVHLHKNCIPQYTIGHWQKLDS 432



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>BMP5_HUMAN (P22003) Bone morphogenetic protein 5 precursor (BMP-5)|
          Length = 454

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 79  SRVRYIFSPHFQPRRLKCT-TTRLT--DPAQAVLHDSFLASDSDSTLS 213
           +R  Y  SP+  PRR++ + TT LT   P  A LHD+   +D+D  +S
Sbjct: 112 ARKGYPASPNGYPRRIQLSRTTPLTTQSPPLASLHDTNFLNDADMVMS 159



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>BEX1_RAT (Q3MKQ2) Protein BEX1 (Brain-expressed X-linked protein 1 homolog)|
           (EG2RVC)
          Length = 128

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 6   SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 140
           ++ +FG + RQL  K+RE+QL        +     ST PP   HH
Sbjct: 84  NVQRFGEDMRQLMEKLRERQLS-------HSLRAVSTDPPHHDHH 121



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>BEX2_RAT (Q3MKQ1) Protein BEX2 (Brain-expressed X-linked protein 2 homolog)|
          Length = 129

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 6   SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 140
           ++ +FG + RQL  K+RE+QL        +     ST PP   HH
Sbjct: 85  NVQRFGEDMRQLMEKLRERQLS-------HSLRAVSTDPPHHDHH 122



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>HSP78_CANAL (Q96UX5) Heat shock protein 78, mitochondrial precursor|
          Length = 812

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 46  QKSGRNNYIQKSRVRYIFSPHFQPRRLKCTTTRLTDPAQAVLHDSFLASDSDSTLS 213
           Q +   +Y + SR++Y   P  Q +  + +   L   +  +LHDS  + D    +S
Sbjct: 415 QATREGDYARASRIQYASIPELQDKIQELSKNELAAKSSNLLHDSVTSEDIAGVIS 470



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>BEX1_MOUSE (Q9R224) Protein BEX1 (Brain-expressed X-linked protein 1 homolog)|
           (Reduced expression protein 3) (REX-3)
          Length = 128

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 6   SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 140
           ++ +FG + RQL  K+RE+QL        +     ST PP   HH
Sbjct: 84  NVQRFGGDVRQLMEKLRERQLS-------HSLRAVSTDPPHHDHH 121



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>BEX2_MOUSE (Q9WTZ8) Protein BEX2 (Brain-expressed X-linked protein 2 homolog)|
          Length = 129

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 6   SLAKFGSNNRQLHPKVREKQLHPKVTS*VYIFTTFSTTPPEMYHH 140
           ++ +FG + RQL  K+RE+QL        +     ST PP   HH
Sbjct: 85  NVQRFGDDVRQLMEKLRERQLS-------HSLRAVSTDPPHHDHH 122



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>EFG_GLOVI (Q7NEF2) Elongation factor G (EF-G)|
          Length = 707

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -1

Query: 353 EDIFGAVLETA---AQAYGNDESIEVMLEELAND-PELADEYMKLLLAQVGE 210
           ED    +++     A  YGND   ++ +EE+  D  EL  EY   L+  V E
Sbjct: 184 EDTLSGIVDLVGMKAYVYGNDIGTDIRVEEIPADMEELVQEYRAKLIEAVSE 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,228,386
Number of Sequences: 219361
Number of extensions: 864360
Number of successful extensions: 2552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2548
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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