ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478222.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
2ref|XM_506351.1| PREDICTED Oryza sativa (japonica cultivar-group... 92 2e-15
3gb|AY224569.1| Oryza sativa (japonica cultivar-group) isolate 29... 92 2e-15
4dbj|AB078881.1| Oryza sativa CRTintP mRNA for calreticulin inter... 92 2e-15
5dbj|AK065220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
7dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
8gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete seq... 50 0.006
9gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete seq... 50 0.006
10gb|DQ139901.1| Trimorphodon biscutatus CRISP-TRI1 mRNA, partial cds 44 0.38
11gb|DQ139900.1| Telescopus dhara CRISP-TEL1 mRNA, partial cds 44 0.38
12gb|DQ139890.1| Dispholidus typus CRISP-DIS2 mRNA, complete cds 44 0.38
13gb|DQ139889.1| Dispholidus typus CRISP-DIS1 mRNA, complete cds 44 0.38
14gb|AY261467.1| Trimeresurus jerdonii cysteine-rich venom protein... 42 1.5
15gb|AY423708.1| Trimeresurus stejnegeri cysteine-rich secretory p... 42 1.5
16gb|AF384219.1| Trimeresurus flavoviridis triflin mRNA, complete cds 42 1.5
17gb|AF384218.1| Agkistrodon blomhoffi ablomin mRNA, complete cds 42 1.5
18gb|AY181983.1| Crotalus atrox catrin mRNA, complete cds 42 1.5
19gb|AY181982.1| Agkistrodon piscivorus piscivorus piscivorin mRNA... 42 1.5
20emb|AL935288.9| Zebrafish DNA sequence from clone CH211-250C4, c... 42 1.5
21gb|U59447.1|PMU59447 Trimeresurus mucrosquamatus prepro-cysteine... 42 1.5
22gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosom... 40 5.9
23ref|XM_509671.1| PREDICTED: Pan troglodytes LOC452587 (LOC452587... 40 5.9
24gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, com... 40 5.9
25gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.9
26gb|BC004495.1| Homo sapiens chromosome 13 open reading frame 18,... 40 5.9
27gb|BC021097.1| Homo sapiens chromosome 13 open reading frame 18,... 40 5.9
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
29ref|XM_386428.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 5.9
30gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.9
31gb|AC124493.4| Mus musculus BAC clone RP23-462P13 from chromosom... 40 5.9
32gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complet... 40 5.9
33gb|BC043488.1| Homo sapiens chromosome 13 open reading frame 18,... 40 5.9
34gb|BC032311.1| Homo sapiens chromosome 13 open reading frame 18,... 40 5.9
35gb|AC163330.4| Mus musculus chromosome 5, clone RP23-167H23, com... 40 5.9
36emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chro... 40 5.9
37gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.9
38emb|AL162738.12| Human DNA sequence from clone RP5-1110L4 on chr... 40 5.9
39emb|AL139801.17| Human DNA sequence from clone RP11-247M1 on chr... 40 5.9
40emb|AL136234.12| Human DNA sequence from clone RP5-933B4 on chro... 40 5.9
41gb|AY299475.1| Ophiophagus hannah opharin precursor, mRNA, compl... 40 5.9
42dbj|AK125750.1| Homo sapiens cDNA FLJ43762 fis, clone TESTI2048465 40 5.9
43dbj|AK093073.1| Homo sapiens cDNA FLJ35754 fis, clone TESTI20046... 40 5.9
44emb|CR590165.1| full-length cDNA clone CS0DL009YH15 of B cells (... 40 5.9
45ref|NM_025113.1| Homo sapiens chromosome 13 open reading frame 1... 40 5.9
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
47gb|AY181984.1| Ophiophagus hannah ophanin mRNA, complete cds 40 5.9
48gb|DQ139898.1| Philodryas olfersii CRISP-PHI2 mRNA, partial cds 40 5.9
49gb|DQ139897.1| Philodryas olfersii CRISP-PHI1 mRNA, partial cds 40 5.9
50gb|DQ139895.1| Liophis poecilogyrus CRISP-LIO1 mRNA, partial cds 40 5.9
51gb|DQ139894.1| Leioheterodon madagascariensis CRISP-LEI1 mRNA, p... 40 5.9
52gb|DQ139891.1| Dispholidus typus CRISP-DIS3 mRNA, complete cds 40 5.9
53gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosom... 40 5.9
54dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.9
55dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
56dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
57dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
58emb|BX641126.1|HSM807054 Homo sapiens mRNA; cDNA DKFZp667G1115 (... 40 5.9
59dbj|AK025215.1| Homo sapiens cDNA: FLJ21562 fis, clone COL06420 40 5.9
60dbj|AP003702.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
61dbj|AP003789.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.9 
>ref|XM_478222.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2901

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                        
Query: 226  agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 285
            |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 2846 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 2787

                                                                        
Query: 286  acctcgatgctctcgtcgttgccataagcctgagcagcagtctcaaggacggcaccaaag 345
             |||| || ||||| || |  ||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 2786 tcctcaatactctcatcttcaccataagcctgtgcagcagtttcgaggaccgcaccgaag 2727

                                      
Query: 346  atatcctcaggggcatcatgttgctc 371
            ||||||   ||||  |||||||||||
Sbjct: 2726 atatccctgggggagtcatgttgctc 2701
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>ref|XM_506351.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1197_D06.108
            patrial mRNA
          Length = 3655

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                        
Query: 226  agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 285
            |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 3312 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 3253

                                                                        
Query: 286  acctcgatgctctcgtcgttgccataagcctgagcagcagtctcaaggacggcaccaaag 345
             |||| || ||||| || |  ||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 3252 tcctcaatactctcatcttcaccataagcctgtgcagcagtttcgaggaccgcaccgaag 3193

                                      
Query: 346  atatcctcaggggcatcatgttgctc 371
            ||||||   ||||  |||||||||||
Sbjct: 3192 atatccctgggggagtcatgttgctc 3167
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>gb|AY224569.1| Oryza sativa (japonica cultivar-group) isolate 29950 unknown mRNA
          Length = 1032

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                       
Query: 226 agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 285
           |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 977 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 918

                                                                       
Query: 286 acctcgatgctctcgtcgttgccataagcctgagcagcagtctcaaggacggcaccaaag 345
            |||| || ||||| || |  ||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 917 tcctcaatactctcatcttcaccataagcctgtgcagcagtttcgaggaccgcaccgaag 858

                                     
Query: 346 atatcctcaggggcatcatgttgctc 371
           ||||||   ||||  |||||||||||
Sbjct: 857 atatccctgggggagtcatgttgctc 832
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>dbj|AB078881.1| Oryza sativa CRTintP mRNA for calreticulin interacted protein,
            complete cds
          Length = 3401

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                        
Query: 226  agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 285
            |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 3141 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 3082

                                                                        
Query: 286  acctcgatgctctcgtcgttgccataagcctgagcagcagtctcaaggacggcaccaaag 345
             |||| || ||||| || |  ||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 3081 tcctcaatactctcatcttcaccataagcctgtgcagcagtttcgaggaccgcaccgaag 3022

                                      
Query: 346  atatcctcaggggcatcatgttgctc 371
            ||||||   ||||  |||||||||||
Sbjct: 3021 atatccctgggggagtcatgttgctc 2996
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>dbj|AK065220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G13, full
            insert sequence
          Length = 3655

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 121/146 (82%)
 Strand = Plus / Minus

                                                                        
Query: 226  agcagaagcttcatgtactcatcagcaagctctgggtcattggcaagctcttcaagcatg 285
            |||||||| |||| ||| ||||| | ||| ||||||||| || |||||||||||||||||
Sbjct: 3312 agcagaagtttcaggtagtcatctgtaagttctgggtcactgacaagctcttcaagcatg 3253

                                                                        
Query: 286  acctcgatgctctcgtcgttgccataagcctgagcagcagtctcaaggacggcaccaaag 345
             |||| || ||||| || |  ||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 3252 tcctcaatactctcatcttcaccataagcctgtgcagcagtttcgaggaccgcaccgaag 3193

                                      
Query: 346  atatcctcaggggcatcatgttgctc 371
            ||||||   ||||  |||||||||||
Sbjct: 3192 atatccctgggggagtcatgttgctc 3167
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                            
Query: 256      tctgggtcattggcaagctcttcaagcatgacctcgatgctctcgtcgttgccataagcc 315
                ||||||||| || ||||||||||||||||| |||| || ||||| || |  |||||||||
Sbjct: 18664296 tctgggtcactgacaagctcttcaagcatgtcctcaatactctcatcttcaccataagcc 18664355

                                                    
Query: 316      tgagcagcagtctcaaggacggcaccaaagatatcc 351
                || |||||||| || ||||| ||||| |||||||||
Sbjct: 18664356 tgtgcagcagtttcgaggaccgcaccgaagatatcc 18664391



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 96       attttcaccacattttcaac 115
                ||||||||||||||||||||
Sbjct: 24795024 attttcaccacattttcaac 24795005



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      attttcaccacattttcaac 115
               ||||||||||||||||||||
Sbjct: 1259552 attttcaccacattttcaac 1259571
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>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1197_D06
          Length = 103844

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                         
Query: 256   tctgggtcattggcaagctcttcaagcatgacctcgatgctctcgtcgttgccataagcc 315
             ||||||||| || ||||||||||||||||| |||| || ||||| || |  |||||||||
Sbjct: 89350 tctgggtcactgacaagctcttcaagcatgtcctcaatactctcatcttcaccataagcc 89409

                                                 
Query: 316   tgagcagcagtctcaaggacggcaccaaagatatcc 351
             || |||||||| || ||||| ||||| |||||||||
Sbjct: 89410 tgtgcagcagtttcgaggaccgcaccgaagatatcc 89445
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>gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete sequence
          Length = 135880

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 15    aaatttggtagtaacaacagacaac 39
             |||||||||||||||||||||||||
Sbjct: 47564 aaatttggtagtaacaacagacaac 47540
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>gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete sequence
          Length = 122859

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 15    aaatttggtagtaacaacagacaac 39
             |||||||||||||||||||||||||
Sbjct: 38895 aaatttggtagtaacaacagacaac 38871
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>gb|DQ139901.1| Trimorphodon biscutatus CRISP-TRI1 mRNA, partial cds
          Length = 708

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  gtatatattttcaccacatttt 111
           ||||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatttt 267
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>gb|DQ139900.1| Telescopus dhara CRISP-TEL1 mRNA, partial cds
          Length = 630

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  gtatatattttcaccacatttt 111
           ||||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatttt 267
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>gb|DQ139890.1| Dispholidus typus CRISP-DIS2 mRNA, complete cds
          Length = 714

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  gtatatattttcaccacatttt 111
           ||||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatttt 267
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>gb|DQ139889.1| Dispholidus typus CRISP-DIS1 mRNA, complete cds
          Length = 714

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  gtatatattttcaccacatttt 111
           ||||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatttt 267
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>gb|AY261467.1| Trimeresurus jerdonii cysteine-rich venom protein mRNA, complete
           cds
          Length = 723

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  tatatattttcaccacatttt 111
           |||||||||||||||||||||
Sbjct: 290 tatatattttcaccacatttt 270
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>gb|AY423708.1| Trimeresurus stejnegeri cysteine-rich secretory protein mRNA,
           partial cds
          Length = 1250

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  tatatattttcaccacatttt 111
           |||||||||||||||||||||
Sbjct: 270 tatatattttcaccacatttt 250
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>gb|AF384219.1| Trimeresurus flavoviridis triflin mRNA, complete cds
          Length = 1321

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  tatatattttcaccacatttt 111
           |||||||||||||||||||||
Sbjct: 337 tatatattttcaccacatttt 317
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>gb|AF384218.1| Agkistrodon blomhoffi ablomin mRNA, complete cds
          Length = 1336

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  tatatattttcaccacatttt 111
           |||||||||||||||||||||
Sbjct: 355 tatatattttcaccacatttt 335
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>gb|AY181983.1| Crotalus atrox catrin mRNA, complete cds
          Length = 1367

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  tatatattttcaccacatttt 111
           |||||||||||||||||||||
Sbjct: 400 tatatattttcaccacatttt 380
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>gb|AY181982.1| Agkistrodon piscivorus piscivorus piscivorin mRNA, complete cds
          Length = 1323

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  tatatattttcaccacatttt 111
           |||||||||||||||||||||
Sbjct: 353 tatatattttcaccacatttt 333
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>emb|AL935288.9| Zebrafish DNA sequence from clone CH211-250C4, complete sequence
          Length = 181644

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    tatattttcaccacattttca 113
             |||||||||||||||||||||
Sbjct: 15508 tatattttcaccacattttca 15528
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>gb|U59447.1|PMU59447 Trimeresurus mucrosquamatus prepro-cysteine-rich venom protein
           mRNA, complete cds
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  tatatattttcaccacatttt 111
           |||||||||||||||||||||
Sbjct: 347 tatatattttcaccacatttt 327
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>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete
             sequence
          Length = 217187

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    agaaacaattacatccaaaagtca 81
             |||||||| |||||||||||||||
Sbjct: 56276 agaaacaaatacatccaaaagtca 56299
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>ref|XM_509671.1| PREDICTED: Pan troglodytes LOC452587 (LOC452587), mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 1779 ctcaggggcatcatgttgct 1760
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>gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, complete sequence
          Length = 151344

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 90   gtatatattttcaccacattttca 113
            ||||||||| ||||||||||||||
Sbjct: 4835 gtatatattatcaccacattttca 4812
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 272     gctcttcaagcatgacctcgatgc 295
               |||| |||||||||||||||||||
Sbjct: 3206846 gctcctcaagcatgacctcgatgc 3206869
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>gb|BC004495.1| Homo sapiens chromosome 13 open reading frame 18, mRNA (cDNA clone
            IMAGE:3830267), partial cds
          Length = 1728

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 1301 ctcaggggcatcatgttgct 1282
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>gb|BC021097.1| Homo sapiens chromosome 13 open reading frame 18, mRNA (cDNA clone
           IMAGE:4878849), complete cds
          Length = 1380

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 ctcaggggcatcatgttgct 370
           ||||||||||||||||||||
Sbjct: 954 ctcaggggcatcatgttgct 935
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 96       attttcaccacattttcaac 115
                ||||||||||||||||||||
Sbjct: 13950365 attttcaccacattttcaac 13950346
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>ref|XM_386428.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06252.1)
           partial mRNA
          Length = 1209

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 agcctgagcagcagtctcaa 331
           ||||||||||||||||||||
Sbjct: 686 agcctgagcagcagtctcaa 705
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>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    attttcaccacattttcaac 115
             ||||||||||||||||||||
Sbjct: 61117 attttcaccacattttcaac 61136
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>gb|AC124493.4| Mus musculus BAC clone RP23-462P13 from chromosome 1, complete sequence
          Length = 191967

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    ctcatcagcaagctctgggt 262
              ||||||||||||||||||||
Sbjct: 103117 ctcatcagcaagctctgggt 103136
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>gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complete sequence
          Length = 113258

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 29    caacagacaactacatccaaaagtcagggagaaaca 64
             ||||||||||||||||| ||||  || |||||||||
Sbjct: 46708 caacagacaactacatcaaaaacccaaggagaaaca 46673
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>gb|BC043488.1| Homo sapiens chromosome 13 open reading frame 18, mRNA (cDNA clone
            MGC:49852 IMAGE:5205680), complete cds
          Length = 2422

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 1950 ctcaggggcatcatgttgct 1931
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>gb|BC032311.1| Homo sapiens chromosome 13 open reading frame 18, mRNA (cDNA clone
            MGC:40256 IMAGE:5212065), complete cds
          Length = 4124

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 3631 ctcaggggcatcatgttgct 3612
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>gb|AC163330.4| Mus musculus chromosome 5, clone RP23-167H23, complete sequence
          Length = 207781

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    gtatatattttcaccacattttca 113
             ||||||||| ||||||||||||||
Sbjct: 99956 gtatatattatcaccacattttca 99979
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>emb|AL590132.7| Human DNA sequence from clone RP11-255G4 on chromosome 1 Contains part
             of the KCNH1 gene for a potassium voltage-gated channel,
             subfamily H (eag-related), member, complete sequence
          Length = 150090

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    ggtatatattttcaccacattttc 112
             ||||||||| ||||||||||||||
Sbjct: 38036 ggtatatatattcaccacattttc 38013
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 328     tcaaggacggcaccaaagat 347
               ||||||||||||||||||||
Sbjct: 1734602 tcaaggacggcaccaaagat 1734583
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>emb|AL162738.12| Human DNA sequence from clone RP5-1110L4 on chromosome 1p35.3-36.13
              Contains the 5' end of a novel gene, complete sequence
          Length = 121828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     ttaggtatatattttcacca 105
              ||||||||||||||||||||
Sbjct: 111716 ttaggtatatattttcacca 111735
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>emb|AL139801.17| Human DNA sequence from clone RP11-247M1 on chromosome 13 Contains a
             novel FLJ21562 containing gene, a novel gene, a novel
             pseudogene and a CpG island, complete sequence
          Length = 145481

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   ctcaggggcatcatgttgct 370
             ||||||||||||||||||||
Sbjct: 54236 ctcaggggcatcatgttgct 54217
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>emb|AL136234.12| Human DNA sequence from clone RP5-933B4 on chromosome 1p22.3-31.1
             Contains a novel gene and the 5' end of a novel gene,
             complete sequence
          Length = 119481

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   catcagcaagctctgggtca 264
             ||||||||||||||||||||
Sbjct: 44350 catcagcaagctctgggtca 44369
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>gb|AY299475.1| Ophiophagus hannah opharin precursor, mRNA, complete cds
          Length = 1393

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gtatatattttcaccacatt 109
           ||||||||||||||||||||
Sbjct: 406 gtatatattttcaccacatt 387
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>dbj|AK125750.1| Homo sapiens cDNA FLJ43762 fis, clone TESTI2048465
          Length = 1733

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 1325 ctcaggggcatcatgttgct 1306
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>dbj|AK093073.1| Homo sapiens cDNA FLJ35754 fis, clone TESTI2004649, weakly similar to
            Homo sapiens B2 gene
          Length = 2590

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 2552 ctcaggggcatcatgttgct 2533
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>emb|CR590165.1| full-length cDNA clone CS0DL009YH15 of B cells (Ramos cell line) Cot
            25-normalized of Homo sapiens (human)
          Length = 2722

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 2343 ctcaggggcatcatgttgct 2324
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>ref|NM_025113.1| Homo sapiens chromosome 13 open reading frame 18 (C13orf18), mRNA
          Length = 2508

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 2083 ctcaggggcatcatgttgct 2064
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 96       attttcaccacattttcaac 115
                ||||||||||||||||||||
Sbjct: 13945340 attttcaccacattttcaac 13945321
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>gb|AY181984.1| Ophiophagus hannah ophanin mRNA, complete cds
          Length = 1367

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gtatatattttcaccacatt 109
           ||||||||||||||||||||
Sbjct: 397 gtatatattttcaccacatt 378
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>gb|DQ139898.1| Philodryas olfersii CRISP-PHI2 mRNA, partial cds
          Length = 708

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gtatatattttcaccacatt 109
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|DQ139897.1| Philodryas olfersii CRISP-PHI1 mRNA, partial cds
          Length = 696

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gtatatattttcaccacatt 109
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|DQ139895.1| Liophis poecilogyrus CRISP-LIO1 mRNA, partial cds
          Length = 699

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gtatatattttcaccacatt 109
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|DQ139894.1| Leioheterodon madagascariensis CRISP-LEI1 mRNA, partial cds
          Length = 642

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gtatatattttcaccacatt 109
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|DQ139891.1| Dispholidus typus CRISP-DIS3 mRNA, complete cds
          Length = 714

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gtatatattttcaccacatt 109
           ||||||||||||||||||||
Sbjct: 288 gtatatattttcaccacatt 269
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>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence
          Length = 230020

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 29     caacagacaactacatccaaaagtcagggagaaaca 64
              ||||||||||||||||| ||||  || |||||||||
Sbjct: 134942 caacagacaactacatcaaaaacccaaggagaaaca 134907
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 140     cccgcttgaccgaccccgcc 159
               ||||||||||||||||||||
Sbjct: 5415096 cccgcttgaccgaccccgcc 5415077
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>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0474G09
          Length = 169511

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    attttcaccacattttcaac 115
             ||||||||||||||||||||
Sbjct: 24387 attttcaccacattttcaac 24406
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>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0057M23
          Length = 168029

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     attttcaccacattttcaac 115
              ||||||||||||||||||||
Sbjct: 161159 attttcaccacattttcaac 161178
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>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0493C06
          Length = 158923

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    attttcaccacattttcaac 115
             ||||||||||||||||||||
Sbjct: 29475 attttcaccacattttcaac 29456
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>emb|BX641126.1|HSM807054 Homo sapiens mRNA; cDNA DKFZp667G1115 (from clone DKFZp667G1115)
          Length = 2101

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 1638 ctcaggggcatcatgttgct 1619
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>dbj|AK025215.1| Homo sapiens cDNA: FLJ21562 fis, clone COL06420
          Length = 2508

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  ctcaggggcatcatgttgct 370
            ||||||||||||||||||||
Sbjct: 2083 ctcaggggcatcatgttgct 2064
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>dbj|AP003702.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1007_H09
          Length = 42137

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    attttcaccacattttcaac 115
             ||||||||||||||||||||
Sbjct: 29129 attttcaccacattttcaac 29148
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>dbj|AP003789.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1433G4, complete
             sequence
          Length = 175784

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    aaacaattacatccaaaagt 79
             ||||||||||||||||||||
Sbjct: 73717 aaacaattacatccaaaagt 73736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,543,792
Number of Sequences: 3902068
Number of extensions: 3543792
Number of successful extensions: 67836
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67605
Number of HSP's gapped (non-prelim): 231
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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