ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IBP2_CHICK (P49705) Insulin-like growth factor-binding protein 2... 32 0.33
2CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [U... 32 0.43
3CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [U... 31 0.96
4CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [U... 31 0.96
5CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [U... 31 0.96
6CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [U... 31 0.96
7CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [U... 30 1.3
8CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [U... 30 1.3
9CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [U... 30 2.1
10CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic sub... 29 2.8
11CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic sub... 29 2.8
12OSTP_MOUSE (P10923) Osteopontin precursor (Bone sialoprotein-1) ... 29 3.6
13MTCH1_HUMAN (Q9NZJ7) Mitochondrial carrier homolog 1 (Presenilin... 28 4.8
14Y007_MYCTU (P71575) Hypothetical protein Rv0007/MT0007 28 6.2

>IBP2_CHICK (P49705) Insulin-like growth factor-binding protein 2 precursor|
           (IGFBP-2) (IBP-2) (IGF-binding protein 2)
          Length = 311

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 180 VGSAGRGGGERACFQRVDAAAALPVRARDNGALEQEALHPVPCAGDR 40
           +G  GRGG  RA + R+  AA  P  A    AL +      PC  +R
Sbjct: 3   LGGVGRGGAARAAWPRLLLAALAPALALAGPALPEVLFRCPPCTAER 49



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>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3)
          Length = 1026

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L F+ W+++ LYPF  G+MG  ++ P I+
Sbjct: 961  LFFSFWVIVHLYPFLKGLMGRQNRTPTIV 989



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>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5)
          Length = 1049

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L F  W+++ LYPF  G+MG  ++ P I+
Sbjct: 984  LFFAFWVIVHLYPFLKGLMGRQNRTPTIV 1012



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>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1
            protein 1) (Isoxaben resistant protein 1) (Ath-B)
          Length = 1065

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L F  W+++ LYPF  G+MG  ++ P I+
Sbjct: 1000 LFFAFWVIVHLYPFLKGLMGRQNRTPTIV 1028



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>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1)
          Length = 985

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 140  FNVWMLLLLYPFALGIMGHWSKRPYIL 60
            F  W++L LYPF  G+MG  ++ P I+
Sbjct: 920  FAFWVILHLYPFLKGLMGRQNRTPTIV 946



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>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L F +W+++ LYPF  G++G   K P I+
Sbjct: 1018 LFFALWVIVHLYPFLKGMLGKQDKMPTII 1046



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>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
            (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L F +W+++ LYPF  G++G   + P I+
Sbjct: 1019 LFFALWVIIHLYPFLKGLLGKQDRMPTII 1047



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>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-5)
          Length = 1069

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L F  W++L LYPF  G++G   + P I+
Sbjct: 1004 LFFAFWVILHLYPFLKGLLGKQDRMPTII 1032



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>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
            (AtRSW1)
          Length = 1081

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L F +W++  LYPF  G++G  ++ P I+
Sbjct: 1015 LFFALWVIAHLYPFLKGLLGRQNRTPTIV 1043



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>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
            [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L+F  W++  LYPF  G++G  ++ P I+
Sbjct: 1002 LLFAFWVVAHLYPFLKGLLGRQNRTPTIV 1030



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>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9|
            [UDP-forming] (EC 2.4.1.12) (AtCesA-9)
          Length = 1088

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 146  LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60
            L F +W+++ LYPF  G++G   + P I+
Sbjct: 1022 LFFALWVIVHLYPFLKGLLGKQDRVPTII 1050



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>OSTP_MOUSE (P10923) Osteopontin precursor (Bone sialoprotein-1) (Secreted|
           phosphoprotein 1) (SPP-1) (Minopontin) (Early
           T-lymphocyte activation 1 protein) (2AR) (Calcium
           oxalate crystal growth inhibitor protein)
          Length = 294

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -3

Query: 144 CFQRVDAAAALPVRARDNGALEQE--ALHPVPCA 49
           CF     A++LPV+  D+G+ E++  +LHP P A
Sbjct: 7   CFCLFGIASSLPVKVTDSGSSEEKLYSLHPDPIA 40



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>MTCH1_HUMAN (Q9NZJ7) Mitochondrial carrier homolog 1 (Presenilin-associated|
           protein)
          Length = 389

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 189 WAVVGSAGRGGGERACFQRVDAAAALPVRARD-NGALEQEALHPVPCAGDRGR 34
           WA  G+AG  G       R  AAA +  RARD   A      HP P A    R
Sbjct: 11  WARGGAAGMAGAGAGAGARGGAAAGVEARARDPPPAHRAHPRHPRPAAQPSAR 63



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>Y007_MYCTU (P71575) Hypothetical protein Rv0007/MT0007|
          Length = 304

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 182 WSAAQVAGAASGLVFNVWMLLLLYPF-ALGIMGHWSK 75
           WS  +V+   S  +F VWM+ + + +  LG MG W+K
Sbjct: 199 WSTLKVSLLLSVALFFVWMITVAFLYLVLGGMGVWAK 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,500,254
Number of Sequences: 219361
Number of extensions: 326880
Number of successful extensions: 1438
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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