Clone Name | rbastl50g03 |
---|---|
Clone Library Name | barley_pub |
>IBP2_CHICK (P49705) Insulin-like growth factor-binding protein 2 precursor| (IGFBP-2) (IBP-2) (IGF-binding protein 2) Length = 311 Score = 32.3 bits (72), Expect = 0.33 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -3 Query: 180 VGSAGRGGGERACFQRVDAAAALPVRARDNGALEQEALHPVPCAGDR 40 +G GRGG RA + R+ AA P A AL + PC +R Sbjct: 3 LGGVGRGGAARAAWPRLLLAALAPALALAGPALPEVLFRCPPCTAER 49
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 32.0 bits (71), Expect = 0.43 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L F+ W+++ LYPF G+MG ++ P I+ Sbjct: 961 LFFSFWVIVHLYPFLKGLMGRQNRTPTIV 989
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 30.8 bits (68), Expect = 0.96 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L F W+++ LYPF G+MG ++ P I+ Sbjct: 984 LFFAFWVIVHLYPFLKGLMGRQNRTPTIV 1012
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 30.8 bits (68), Expect = 0.96 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L F W+++ LYPF G+MG ++ P I+ Sbjct: 1000 LFFAFWVIVHLYPFLKGLMGRQNRTPTIV 1028
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 30.8 bits (68), Expect = 0.96 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -1 Query: 140 FNVWMLLLLYPFALGIMGHWSKRPYIL 60 F W++L LYPF G+MG ++ P I+ Sbjct: 920 FAFWVILHLYPFLKGLMGRQNRTPTIV 946
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 30.8 bits (68), Expect = 0.96 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L F +W+++ LYPF G++G K P I+ Sbjct: 1018 LFFALWVIVHLYPFLKGMLGKQDKMPTII 1046
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 30.4 bits (67), Expect = 1.3 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L F +W+++ LYPF G++G + P I+ Sbjct: 1019 LFFALWVIIHLYPFLKGLLGKQDRMPTII 1047
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 30.4 bits (67), Expect = 1.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L F W++L LYPF G++G + P I+ Sbjct: 1004 LFFAFWVILHLYPFLKGLLGKQDRMPTII 1032
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 29.6 bits (65), Expect = 2.1 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L F +W++ LYPF G++G ++ P I+ Sbjct: 1015 LFFALWVIAHLYPFLKGLLGRQNRTPTIV 1043
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 29.3 bits (64), Expect = 2.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L+F W++ LYPF G++G ++ P I+ Sbjct: 1002 LLFAFWVVAHLYPFLKGLLGRQNRTPTIV 1030
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 29.3 bits (64), Expect = 2.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 146 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 60 L F +W+++ LYPF G++G + P I+ Sbjct: 1022 LFFALWVIVHLYPFLKGLLGKQDRVPTII 1050
>OSTP_MOUSE (P10923) Osteopontin precursor (Bone sialoprotein-1) (Secreted| phosphoprotein 1) (SPP-1) (Minopontin) (Early T-lymphocyte activation 1 protein) (2AR) (Calcium oxalate crystal growth inhibitor protein) Length = 294 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Frame = -3 Query: 144 CFQRVDAAAALPVRARDNGALEQE--ALHPVPCA 49 CF A++LPV+ D+G+ E++ +LHP P A Sbjct: 7 CFCLFGIASSLPVKVTDSGSSEEKLYSLHPDPIA 40
>MTCH1_HUMAN (Q9NZJ7) Mitochondrial carrier homolog 1 (Presenilin-associated| protein) Length = 389 Score = 28.5 bits (62), Expect = 4.8 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = -3 Query: 189 WAVVGSAGRGGGERACFQRVDAAAALPVRARD-NGALEQEALHPVPCAGDRGR 34 WA G+AG G R AAA + RARD A HP P A R Sbjct: 11 WARGGAAGMAGAGAGAGARGGAAAGVEARARDPPPAHRAHPRHPRPAAQPSAR 63
>Y007_MYCTU (P71575) Hypothetical protein Rv0007/MT0007| Length = 304 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -1 Query: 182 WSAAQVAGAASGLVFNVWMLLLLYPF-ALGIMGHWSK 75 WS +V+ S +F VWM+ + + + LG MG W+K Sbjct: 199 WSTLKVSLLLSVALFFVWMITVAFLYLVLGGMGVWAK 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,500,254 Number of Sequences: 219361 Number of extensions: 326880 Number of successful extensions: 1438 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1438 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)