ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEMO_RABIT (P20058) Hemopexin precursor 29 4.0
2XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonu... 28 8.9

>HEMO_RABIT (P20058) Hemopexin precursor|
          Length = 460

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   RKGHINTYMIKGELTWHATTRPNPATFLKA 97
           R GH + Y+IKG+  W  T+  N   + K+
Sbjct: 104 RHGHTSVYLIKGDKVWVYTSEKNEKVYPKS 133



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>XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonuclease 2)|
            (Exonuclease II) (Exo II) (p140)
          Length = 1328

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 16   PHQYIHDQR-RANMACHHKAKSSNIFKGREGGRGVE-EAKGMNEQNDHL 156
            P   IH  + + +   HH    +   +GR G RG    +K +N ++DH+
Sbjct: 1270 PESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELNRKHDHI 1318


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,821,555
Number of Sequences: 219361
Number of extensions: 245427
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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