ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YOP1_ASPFU (Q4WTW3) Protein yop1 28 9.0
2EX5B_CHLPN (Q9Z7G7) Exodeoxyribonuclease V beta chain (EC 3.1.11.5) 28 9.0
3TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC... 28 9.0

>YOP1_ASPFU (Q4WTW3) Protein yop1|
          Length = 169

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 55  HYIVEIIIASYVQSYRTRGDHTASESFSEPILERLFVSNKIHAS 186
           +YI + ++  ++   +T G      SF +P+L R F S    A+
Sbjct: 114 YYIFKFVLILWMSLPQTNGAQVVFHSFLQPVLGRFFTSGSTSAN 157



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>EX5B_CHLPN (Q9Z7G7) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1050

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 89  FRATEQEAITLLLNLFLSPSWKGCLYLI 172
           F+ T+++  ++  NLF+SP + G L+LI
Sbjct: 376 FQDTDKQQWSIFSNLFISPKFTGSLFLI 403



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>TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC 3.4.21.-)|
          Length = 1905

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 90  NIRGNNYFNNVMYYSSF 40
           N   NNY+N++ YYSSF
Sbjct: 129 NNNNNNYYNSIEYYSSF 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,032,725
Number of Sequences: 219361
Number of extensions: 1247858
Number of successful extensions: 2247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2247
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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