>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 112/137 (81%), Gaps = 1/137 (0%)
 Strand = Plus / Minus

                                                                            
Query: 56       attacattgttgaaataattattgcctcttatgttcagagctaccgaacaagaggcgatc 115
                ||||||||||||||| ||||  |||||| |||| |||||| |||| ||||||| ||  | 
Sbjct: 39604128 attacattgttgaaacaattcgtgcctcatatgctcagaggtaccaaacaaga-gcagtt 39604070

                                                                            
Query: 116      acactgcttctgaatctttttctgagcccatcttggaaaggttgtttgtatctaataaga 175
                 |||||| ||||||||| | | ||||| ||| |||||||| || || |||||||| | ||
Sbjct: 39604069 gcactgcctctgaatctctgtttgagcacatgttggaaagatttttcgtatctaacagga 39604010

                                 
Query: 176      tacatgcaagccgaggg 192
                ||| ||||||| |||||
Sbjct: 39604009 tacctgcaagctgaggg 39603993



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 260      aaatacaccaaccagaaatttacttatgtccaggctctgaa 300
                |||| ||| |||||||| |||  ||||||||||||||||||
Sbjct: 39603926 aaatgcactaaccagaagtttctttatgtccaggctctgaa 39603886

>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0456E05
          Length = 173699

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 112/137 (81%), Gaps = 1/137 (0%)
 Strand = Plus / Minus

                                                                         
Query: 56    attacattgttgaaataattattgcctcttatgttcagagctaccgaacaagaggcgatc 115
             ||||||||||||||| ||||  |||||| |||| |||||| |||| ||||||| ||  | 
Sbjct: 85084 attacattgttgaaacaattcgtgcctcatatgctcagaggtaccaaacaaga-gcagtt 85026

                                                                         
Query: 116   acactgcttctgaatctttttctgagcccatcttggaaaggttgtttgtatctaataaga 175
              |||||| ||||||||| | | ||||| ||| |||||||| || || |||||||| | ||
Sbjct: 85025 gcactgcctctgaatctctgtttgagcacatgttggaaagatttttcgtatctaacagga 84966

                              
Query: 176   tacatgcaagccgaggg 192
             ||| ||||||| |||||
Sbjct: 84965 tacctgcaagctgaggg 84949



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 260   aaatacaccaaccagaaatttacttatgtccaggctctgaa 300
             |||| ||| |||||||| |||  ||||||||||||||||||
Sbjct: 84882 aaatgcactaaccagaagtttctttatgtccaggctctgaa 84842

>gb|AC105416.3| Homo sapiens BAC clone RP11-310A13 from 4, complete sequence
          Length = 123331

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 120    tgcttctgaatctttttctgag 141
              ||||||||||||||||||||||
Sbjct: 105109 tgcttctgaatctttttctgag 105088

>gb|AC110559.11| Mus musculus chromosome 7, clone RP23-253E12, complete sequence
          Length = 192856

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 47    gagtagtacattacattgttg 67
             |||||||||||||||||||||
Sbjct: 45106 gagtagtacattacattgttg 45126

>gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome 7, complete sequence
          Length = 208880

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    catcttggaaaggttgtttgt 164
              |||||||||||||||||||||
Sbjct: 185803 catcttggaaaggttgtttgt 185783

>gb|AC122232.3| Mus musculus BAC clone RP23-136G1 from chromosome 7, complete sequence
          Length = 182272

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 144   catcttggaaaggttgtttgt 164
             |||||||||||||||||||||
Sbjct: 45712 catcttggaaaggttgtttgt 45692

>emb|CR377229.8| Zebrafish DNA sequence from clone CH211-273M23 in linkage group 17,
            complete sequence
          Length = 142019

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 342  agaaaaagacaagtgtggctc 362
            |||||||||||||||||||||
Sbjct: 3727 agaaaaagacaagtgtggctc 3707

>gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, complete sequence
          Length = 162813

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   tatgtccaggctctgaaatg 303
             ||||||||||||||||||||
Sbjct: 25126 tatgtccaggctctgaaatg 25145

>gb|AC160027.16| Mus musculus 10 BAC RP23-192N23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207847

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 265    caccaaccagaaatttacttatgt 288
              ||||||||||||||||||| ||||
Sbjct: 130000 caccaaccagaaatttactaatgt 130023

>gb|AC134869.4| Mus musculus BAC clone RP23-137C6 from chromosome 13, complete sequence
          Length = 213473

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   agaacaggtagaaaatacac 267
             ||||||||||||||||||||
Sbjct: 60501 agaacaggtagaaaatacac 60520

>ref|XM_757253.1| Ustilago maydis 521 hypothetical protein (UM06199.1) partial mRNA
          Length = 4080

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 244  cgctagaacaggtagaaaat 263
            ||||||||||||||||||||
Sbjct: 2797 cgctagaacaggtagaaaat 2778

>gb|BC061852.1| Rattus norvegicus cDNA clone IMAGE:5621842, partial cds
          Length = 1713

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 ctgcttctgaatctttttct 138
           ||||||||||||||||||||
Sbjct: 708 ctgcttctgaatctttttct 727

>emb|AL583826.16| Human DNA sequence from clone RP11-434B7 on chromosome 1 Contains the
            3' end of the RPS6KC1 gene for ribosomal protein S6
            kinase 52kDa polypeptide 1, complete sequence
          Length = 122208

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   tacattgttgaaataattat 77
            ||||||||||||||||||||
Sbjct: 6651 tacattgttgaaataattat 6632

>emb|AL954830.7| Mouse DNA sequence from clone RP23-12A10 on chromosome 11 Contains the 3'
              end of the Car10 gene for carbonic anhydrase 10, complete
              sequence
          Length = 109889

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     ttacattgttgaaataatta 76
              ||||||||||||||||||||
Sbjct: 104272 ttacattgttgaaataatta 104253

>emb|AL645970.15| Mouse DNA sequence from clone DN-258M5 on chromosome 3, complete
             sequence
          Length = 141160

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   actgcttctgaatctttttc 137
             ||||||||||||||||||||
Sbjct: 64065 actgcttctgaatctttttc 64084

>gb|BC098997.1| Xenopus laevis cDNA clone IMAGE:3404217
          Length = 3450

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gcaacttctccatacatgtt 20
            ||||||||||||||||||||
Sbjct: 2321 gcaacttctccatacatgtt 2340

>gb|AC125609.7| Homo sapiens 3 BAC RP11-190A1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126838

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   tagaagaaaaagacaagtgt 357
             ||||||||||||||||||||
Sbjct: 67412 tagaagaaaaagacaagtgt 67393

>gb|AC157786.7| Mus musculus chromosome 1, clone RP23-280O23, complete sequence
          Length = 205264

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   tatgtccaggctctgaaatg 303
             ||||||||||||||||||||
Sbjct: 97985 tatgtccaggctctgaaatg 97966

>dbj|AK050805.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030020M24 product:CORNEAL WOUND
            HEALING RELATED PROTEIN homolog [Rattus norvegicus], full
            insert sequence
          Length = 3071

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  agaacaggtagaaaatacac 267
            ||||||||||||||||||||
Sbjct: 1768 agaacaggtagaaaatacac 1787

>ref|NM_031626.1| Rattus norvegicus nuclear receptor subfamily 1, group H, member 2
           (Nr1h2), mRNA
          Length = 1959

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 ctgcttctgaatctttttct 138
           ||||||||||||||||||||
Sbjct: 738 ctgcttctgaatctttttct 719

>gb|AC009246.19| Homo sapiens 12 BAC RP11-72A13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 53962

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    ccatacatgttatgtttgta 29
             ||||||||||||||||||||
Sbjct: 10282 ccatacatgttatgtttgta 10263

>dbj|AB102768.1| Oryzias latipes plscr1, zic4, zic1 genes for phospholipid scramblase 1,
              zinc finger of the cerebellum 4, zinc finger of the
              cerebellum 1, partial and complete cds
          Length = 228508

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     ccatacatgttatgtttgtaaatc 33
              ||||| ||||||||||||||||||
Sbjct: 150002 ccataaatgttatgtttgtaaatc 149979

>emb|X81858.1|LEPSA2PSE L.esculentum PSA2 pseudogene
          Length = 1084

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 agaagaaaaagacaagtgtg 358
           ||||||||||||||||||||
Sbjct: 470 agaagaaaaagacaagtgtg 489

>emb|X81857.1|LEPSA1PSE L.esculentum PSA1 pseudogene
          Length = 885

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 agaagaaaaagacaagtgtg 358
           ||||||||||||||||||||
Sbjct: 469 agaagaaaaagacaagtgtg 488

>gb|AC154250.2| Mus musculus BAC clone RP24-193A14 from 14, complete sequence
          Length = 146388

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   ctagaagaaaaagacaagtg 356
             ||||||||||||||||||||
Sbjct: 20158 ctagaagaaaaagacaagtg 20139

>gb|AC134867.3| Mus musculus BAC clone RP23-18L24 from 10, complete sequence
          Length = 200631

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 265    caccaaccagaaatttacttatgt 288
              ||||||||||||||||||| ||||
Sbjct: 185980 caccaaccagaaatttactaatgt 185957

>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     cattgttgaaataattattg 79
              ||||||||||||||||||||
Sbjct: 748460 cattgttgaaataattattg 748441

>gb|U20389.1|RNU20389 Rattus norvegicus orphan nuclear receptor OR-1 mRNA, complete cds
          Length = 1877

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 ctgcttctgaatctttttct 138
           ||||||||||||||||||||
Sbjct: 682 ctgcttctgaatctttttct 663

>gb|U14533.1|RNU14533 Rattus norvegicus orphan receptor mRNA, complete cds
          Length = 1959

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 ctgcttctgaatctttttct 138
           ||||||||||||||||||||
Sbjct: 738 ctgcttctgaatctttttct 719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,559,763
Number of Sequences: 3902068
Number of extensions: 4559763
Number of successful extensions: 82674
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82590
Number of HSP's gapped (non-prelim): 84
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)