ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter ... 28 4.2
2HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2) 28 5.5
3YN60_YEAST (P42840) Hypothetical 32.3 kDa protein in KRE1-HXT14 ... 28 5.5
4YJU7_YEAST (P39526) Hypothetical 229.9 kDa protein in NUC1-NCE1 ... 27 9.4
5LEPA_CHLCH (Q3ATB2) GTP-binding protein lepA 27 9.4
6IF2P_THEVO (Q97BK4) Probable translation initiation factor IF-2 27 9.4
7EFTS_BUCAI (P57326) Elongation factor Ts (EF-Ts) 27 9.4
8TLK2_MOUSE (O55047) Serine/threonine-protein kinase tousled-like... 27 9.4

>S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter XTRP2 (Solute|
           carrier family 6 member 18)
          Length = 628

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -3

Query: 179 IQRWCWSDEAIGQLCFVSYLHSTCIFPKENNVWDKCSHFWLG*IYSIHISLKFYMLMFV 3
           + RW   +   G +C V +L +TC   +  N       +WL    +   SL   ML F+
Sbjct: 435 LPRWVPKEALTGLVCLVCFLSATCFTLQSGN-------YWLEIFDNFAASLNLLMLAFL 486



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>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)|
          Length = 288

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 247 PPPHSHRITDIFSFRRSRPLYGSFKGGAG 161
           P PH HRIT+ F     RP +G  K   G
Sbjct: 41  PHPHPHRITNFFIDNILRPEFGRRKEAGG 69



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>YN60_YEAST (P42840) Hypothetical 32.3 kDa protein in KRE1-HXT14 intergenic|
           region
          Length = 284

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 313 ILSIQIYGGLHASEYEK-IVHDVPPPHSHRITDIFSFRRSRPLYGSFKGGAGQMKL*DNF 137
           I S + YG    S  EK +  D     SH  TD F  +R   LYG   GGA  + +   F
Sbjct: 111 IYSYRGYGNSEGSPSEKGLKLDADCVISHLSTDSFHSKRKLVLYGRSLGGANALYIASKF 170



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>YJU7_YEAST (P39526) Hypothetical 229.9 kDa protein in NUC1-NCE1 intergenic|
           region
          Length = 2014

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 206 EAEYISYSMRMRWRNIMNNLFVLRGMETTIDLYAKDLLFW 325
           E++YISY + MR      +        T+ +LY K LL W
Sbjct: 551 ESDYISYELIMRITVFSTSFIKNNTTSTSSNLYFKGLLCW 590



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>LEPA_CHLCH (Q3ATB2) GTP-binding protein lepA|
          Length = 605

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 334 VGAPEKKILSIQIYGGLHASEY-EKIVHDVPPP 239
           +G    +IL++    G+  SE  E IVH +PPP
Sbjct: 159 MGVKRDEILAVSAKAGIGISELMESIVHRIPPP 191



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>IF2P_THEVO (Q97BK4) Probable translation initiation factor IF-2|
          Length = 589

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 250 VPPPHSHRITDIFSFRRSRPLYGSFKGGAGQMKL*DNFV 134
           +P P   RI   + FR S+P+    +   GQ+K+ DN +
Sbjct: 460 MPVPAKIRILPQYIFRASKPVIVGIRVETGQIKVGDNLI 498



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>EFTS_BUCAI (P57326) Elongation factor Ts (EF-Ts)|
          Length = 268

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 251 IMNNLFVLRGMETTIDLYAKDLLFWCADLDIIIKEL 358
           I NN+ V+  +    D  +KD LF C   DI+++ L
Sbjct: 67  IKNNIGVMLELNCETDFVSKDNLFICLGEDILVEAL 102



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>TLK2_MOUSE (O55047) Serine/threonine-protein kinase tousled-like 2 (EC|
           2.7.11.1) (Tousled-like kinase 2)
          Length = 718

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 241 PHSHRITDIFSFRRSRPLYG 182
           P  H+I+D F  R  +PLYG
Sbjct: 79  PRGHKISDYFERRAEQPLYG 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,819,808
Number of Sequences: 219361
Number of extensions: 1001441
Number of successful extensions: 2030
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2030
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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