ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 167 3e-38
2dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 167 3e-38
3ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
4ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
5dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
6gb|AY107748.1| Zea mays PCO123054 mRNA sequence 90 6e-15
7gb|AC153595.27| Mus musculus 6 BAC RP23-140J24 (Roswell Park Can... 44 0.31
8gb|AC149231.2| Pan troglodytes BAC clone CH251-481H1 from 7, com... 42 1.2
9gb|AY692766.1| Saccharomyces cerevisiae clone FLH112911.01X YFR0... 42 1.2
10gb|AC147094.2| Pan troglodytes BAC clone RP43-52H15 from 7, comp... 42 1.2
11gb|AC142338.1| Pan troglodytes BAC clone RP43-41H4 from 7, compl... 42 1.2
12gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Canc... 42 1.2
13gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 42 1.2
14gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosom... 42 1.2
15gb|AC083875.1|AC083875 Homo sapiens chromosome 7 clone RP11-699P... 42 1.2
16gb|AC091534.7| Homo sapiens 12 BAC RP11-404O18 (Roswell Park Can... 42 1.2
17dbj|AP006351.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.2
18dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI co... 42 1.2
19ref|NM_115484.2| Arabidopsis thaliana unknown protein AT3G56260 ... 40 4.8
20gb|AC160527.9| Mus musculus chromosome 7, clone RP24-269P21, com... 40 4.8
21gb|AC158136.11| Mus musculus chromosome 7, clone RP23-58I15, com... 40 4.8
22gb|AC145817.1| Pan troglodytes BAC clone RP43-6C4 from 7, comple... 40 4.8
23gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete s... 40 4.8
24emb|AL513475.13| Human DNA sequence from clone RP11-277I20 on ch... 40 4.8
25emb|AL138749.13| Human DNA sequence from clone RP11-289F5 on chr... 40 4.8
26gb|AC108510.3| Homo sapiens chromosome 7 clone RP11-98O9, comple... 40 4.8
27emb|AL163763.1|ATF18O21 Arabidopsis thaliana DNA chromosome 3, B... 40 4.8
28emb|BX510940.8| Zebrafish DNA sequence from clone DKEYP-69C1 in ... 40 4.8
29gb|AC027152.11| Homo sapiens chromosome 17, clone RP11-456D7, co... 40 4.8
30gb|AC026225.5| Homo sapiens chromosome 10 clone RP11-78C6, compl... 40 4.8
31gb|AC090214.3| Homo sapiens chromosome 18, clone RP11-800G9, com... 40 4.8
32gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, com... 40 4.8
33gb|AF399011.1| Pseudomonas phage phiKZ, complete genome 40 4.8
34gb|DQ163920.1| Bacteriophage SD1-M, complete genome 40 4.8
35gb|AF077255.1|AF077255 Littorina scutulata isolate Scut18 cytoch... 40 4.8
36gb|AF077254.1|AF077254 Littorina scutulata isolate Scut17 cytoch... 40 4.8
37gb|AF077253.1|AF077253 Littorina scutulata isolate Scut16 cytoch... 40 4.8
38gb|AF077251.1|AF077251 Littorina scutulata isolate Scut14 cytoch... 40 4.8
39gb|AF077249.1|AF077249 Littorina scutulata isolate Scut12 cytoch... 40 4.8
40gb|AF077248.1|AF077248 Littorina scutulata isolate Scut11 cytoch... 40 4.8
41gb|AF077247.1|AF077247 Littorina scutulata isolate Scut10 cytoch... 40 4.8
42gb|AF077246.1|AF077246 Littorina scutulata isolate Scut9 cytochr... 40 4.8
43gb|AF077244.1|AF077244 Littorina scutulata isolate Scut7 cytochr... 40 4.8
44gb|AF077243.1|AF077243 Littorina scutulata isolate Scut6 cytochr... 40 4.8
45gb|AF077242.1|AF077242 Littorina scutulata isolate Scut5 cytochr... 40 4.8
46gb|AF077239.1|AF077239 Littorina scutulata isolate Scut2 cytochr... 40 4.8
47gb|AF077238.1|AF077238 Littorina scutulata isolate Scut1 cytochr... 40 4.8
48gb|AF023609.1|AF023609 Littorina subrotundata cytochrome b gene,... 40 4.8
49gb|AF023608.1|AF023608 Littorina subrotundata cytochrome b gene,... 40 4.8
50gb|AF023607.1|AF023607 Littorina subrotundata cytochrome b gene,... 40 4.8
51gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromos... 40 4.8
52gb|U89697.1|OTU89697 Oxytricha trifallax DNA polymerase alpha ge... 40 4.8
53gb|U46797.1|LHU46797 Littorina horikawai cytochrome b gene, mito... 40 4.8
54emb|AL671331.6| Mouse DNA sequence from clone RP23-126C18 on chr... 40 4.8 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  167 bits (84), Expect = 3e-38
 Identities = 159/184 (86%)
 Strand = Plus / Plus

                                                                            
Query: 145      cctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcgacctcc 204
                |||||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||
Sbjct: 22885749 cctatagcttcatctgaccaacacctcccttgaatgaaccgtataaaggtctcgacctcc 22885808

                                                                            
Query: 205      tgaagctgaatatatcagttattcgatgcgaatgcggtggcggaacatcatgaacaatct 264
                |||||||||||||||| |||||| ||| ||| |||||  | ||  |||| ||||| ||||
Sbjct: 22885809 tgaagctgaatatatcggttatttgatacgagtgcggctgtggctcatcgtgaactatct 22885868

                                                                            
Query: 265      tttcgtactcagaggcatggagaccaccatagatttgtatgctaaggatcttcttttctg 324
                |||||||||| |||| ||||||||| || || | ||| |||||||| || ||||||| ||
Sbjct: 22885869 tttcgtactcggaggaatggagaccgccgtaaacttgaatgctaagaattttcttttgtg 22885928

                    
Query: 325      gtgc 328
                ||||
Sbjct: 22885929 gtgc 22885932



 Score =  131 bits (66), Expect = 2e-27
 Identities = 93/102 (91%)
 Strand = Plus / Plus

                                                                            
Query: 140      gttgtcctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcga 199
                |||| |||||| |||||||||||||  ||| |||||||||||||||||||||||||||||
Sbjct: 22922081 gttgacctataacttcatctgaccaatacctcctttgaatgaaccatataaaggtctcga 22922140

                                                          
Query: 200      cctcctgaagctgaatatatcagttattcgatgcgaatgcgg 241
                ||||||||||||||||||||| |||||| |||  ||||||||
Sbjct: 22922141 cctcctgaagctgaatatatcggttatttgataggaatgcgg 22922182



 Score =  131 bits (66), Expect = 2e-27
 Identities = 180/218 (82%)
 Strand = Plus / Plus

                                                                            
Query: 147      tatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcgacctcctg 206
                |||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||
Sbjct: 22902280 tatagcttcatctgaccaacacctcccttgtatgaaccatataaaggtctcgacctcctg 22902339

                                                                            
Query: 207      aagctgaatatatcagttattcgatgcgaatgcggtggcggaacatcatgaacaatcttt 266
                ||| |||||||||| |||||| |||  ||||  ||| | ||  |||| || || ||||||
Sbjct: 22902340 aagttgaatatatctgttatttgataggaatttggtcgtggctcatcgtggactatcttt 22902399

                                                                            
Query: 267      tcgtactcagaggcatggagaccaccatagatttgtatgctaaggatcttcttttctggt 326
                |||||||| |||| ||||||||| || || | ||| || || || |||||||||| ||||
Sbjct: 22902400 tcgtactccgaggaatggagaccgccgtaaacttgaatactgagtatcttcttttgtggt 22902459

                                                      
Query: 327      gcgccgaccttgacataattatcaaagaactctatcaa 364
                ||    || ||||||| ||| |  ||||||||||||||
Sbjct: 22902460 gcattaactttgacatgattgttgaagaactctatcaa 22902497
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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score =  167 bits (84), Expect = 3e-38
 Identities = 159/184 (86%)
 Strand = Plus / Plus

                                                                         
Query: 145   cctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcgacctcc 204
             |||||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||
Sbjct: 79016 cctatagcttcatctgaccaacacctcccttgaatgaaccgtataaaggtctcgacctcc 79075

                                                                         
Query: 205   tgaagctgaatatatcagttattcgatgcgaatgcggtggcggaacatcatgaacaatct 264
             |||||||||||||||| |||||| ||| ||| |||||  | ||  |||| ||||| ||||
Sbjct: 79076 tgaagctgaatatatcggttatttgatacgagtgcggctgtggctcatcgtgaactatct 79135

                                                                         
Query: 265   tttcgtactcagaggcatggagaccaccatagatttgtatgctaaggatcttcttttctg 324
             |||||||||| |||| ||||||||| || || | ||| |||||||| || ||||||| ||
Sbjct: 79136 tttcgtactcggaggaatggagaccgccgtaaacttgaatgctaagaattttcttttgtg 79195

                 
Query: 325   gtgc 328
             ||||
Sbjct: 79196 gtgc 79199



 Score =  131 bits (66), Expect = 2e-27
 Identities = 93/102 (91%)
 Strand = Plus / Plus

                                                                          
Query: 140    gttgtcctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcga 199
              |||| |||||| |||||||||||||  ||| |||||||||||||||||||||||||||||
Sbjct: 115348 gttgacctataacttcatctgaccaatacctcctttgaatgaaccatataaaggtctcga 115407

                                                        
Query: 200    cctcctgaagctgaatatatcagttattcgatgcgaatgcgg 241
              ||||||||||||||||||||| |||||| |||  ||||||||
Sbjct: 115408 cctcctgaagctgaatatatcggttatttgataggaatgcgg 115449



 Score =  131 bits (66), Expect = 2e-27
 Identities = 180/218 (82%)
 Strand = Plus / Plus

                                                                         
Query: 147   tatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcgacctcctg 206
             |||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||
Sbjct: 95547 tatagcttcatctgaccaacacctcccttgtatgaaccatataaaggtctcgacctcctg 95606

                                                                         
Query: 207   aagctgaatatatcagttattcgatgcgaatgcggtggcggaacatcatgaacaatcttt 266
             ||| |||||||||| |||||| |||  ||||  ||| | ||  |||| || || ||||||
Sbjct: 95607 aagttgaatatatctgttatttgataggaatttggtcgtggctcatcgtggactatcttt 95666

                                                                         
Query: 267   tcgtactcagaggcatggagaccaccatagatttgtatgctaaggatcttcttttctggt 326
             |||||||| |||| ||||||||| || || | ||| || || || |||||||||| ||||
Sbjct: 95667 tcgtactccgaggaatggagaccgccgtaaacttgaatactgagtatcttcttttgtggt 95726

                                                   
Query: 327   gcgccgaccttgacataattatcaaagaactctatcaa 364
             ||    || ||||||| ||| |  ||||||||||||||
Sbjct: 95727 gcattaactttgacatgattgttgaagaactctatcaa 95764
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>ref|XM_478769.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2997

 Score =  165 bits (83), Expect = 1e-37
 Identities = 158/183 (86%)
 Strand = Plus / Minus

                                                                        
Query: 146  ctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcgacctcct 205
            ||||||||||||||||||| |||| || ||||||||||| ||||||||||||||||||||
Sbjct: 2997 ctatagcttcatctgaccaacacctcccttgaatgaaccgtataaaggtctcgacctcct 2938

                                                                        
Query: 206  gaagctgaatatatcagttattcgatgcgaatgcggtggcggaacatcatgaacaatctt 265
            ||||||||||||||| |||||| ||| ||| |||||  | ||  |||| ||||| |||||
Sbjct: 2937 gaagctgaatatatcggttatttgatacgagtgcggctgtggctcatcgtgaactatctt 2878

                                                                        
Query: 266  ttcgtactcagaggcatggagaccaccatagatttgtatgctaaggatcttcttttctgg 325
            ||||||||| |||| ||||||||| || || | ||| |||||||| || ||||||| |||
Sbjct: 2877 ttcgtactcggaggaatggagaccgccgtaaacttgaatgctaagaattttcttttgtgg 2818

               
Query: 326  tgc 328
            |||
Sbjct: 2817 tgc 2815
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>ref|XM_478770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3199

 Score =  131 bits (66), Expect = 2e-27
 Identities = 180/218 (82%)
 Strand = Plus / Minus

                                                                        
Query: 147  tatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcgacctcctg 206
            |||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||
Sbjct: 3107 tatagcttcatctgaccaacacctcccttgtatgaaccatataaaggtctcgacctcctg 3048

                                                                        
Query: 207  aagctgaatatatcagttattcgatgcgaatgcggtggcggaacatcatgaacaatcttt 266
            ||| |||||||||| |||||| |||  ||||  ||| | ||  |||| || || ||||||
Sbjct: 3047 aagttgaatatatctgttatttgataggaatttggtcgtggctcatcgtggactatcttt 2988

                                                                        
Query: 267  tcgtactcagaggcatggagaccaccatagatttgtatgctaaggatcttcttttctggt 326
            |||||||| |||| ||||||||| || || | ||| || || || |||||||||| ||||
Sbjct: 2987 tcgtactccgaggaatggagaccgccgtaaacttgaatactgagtatcttcttttgtggt 2928

                                                  
Query: 327  gcgccgaccttgacataattatcaaagaactctatcaa 364
            ||    || ||||||| ||| |  ||||||||||||||
Sbjct: 2927 gcattaactttgacatgattgttgaagaactctatcaa 2890
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>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full
            insert sequence
          Length = 3200

 Score =  131 bits (66), Expect = 2e-27
 Identities = 180/218 (82%)
 Strand = Plus / Minus

                                                                        
Query: 147  tatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcgacctcctg 206
            |||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||
Sbjct: 3107 tatagcttcatctgaccaacacctcccttgtatgaaccatataaaggtctcgacctcctg 3048

                                                                        
Query: 207  aagctgaatatatcagttattcgatgcgaatgcggtggcggaacatcatgaacaatcttt 266
            ||| |||||||||| |||||| |||  ||||  ||| | ||  |||| || || ||||||
Sbjct: 3047 aagttgaatatatctgttatttgataggaatttggtcgtggctcatcgtggactatcttt 2988

                                                                        
Query: 267  tcgtactcagaggcatggagaccaccatagatttgtatgctaaggatcttcttttctggt 326
            |||||||| |||| ||||||||| || || | ||| || || || |||||||||| ||||
Sbjct: 2987 tcgtactccgaggaatggagaccgccgtaaacttgaatactgagtatcttcttttgtggt 2928

                                                  
Query: 327  gcgccgaccttgacataattatcaaagaactctatcaa 364
            ||    || ||||||| ||| |  ||||||||||||||
Sbjct: 2927 gcattaactttgacatgattgttgaagaactctatcaa 2890
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>gb|AY107748.1| Zea mays PCO123054 mRNA sequence
          Length = 1762

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 159/197 (80%)
 Strand = Plus / Minus

                                                                        
Query: 146  ctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtctcgacctcct 205
            ||||||||||||||||||| | || ||  ||||||| ||||||||||| |||||||||||
Sbjct: 1677 ctatagcttcatctgaccaacgcctcccctgaatgatccatataaaggcctcgacctcct 1618

                                                                        
Query: 206  gaagctgaatatatcagttattcgatgcgaatgcggtggcggaacatcatgaacaatctt 265
            |||||   | |||||||||||   |  |||  ||||||||||| |||  || || ||  |
Sbjct: 1617 gaagccataaatatcagttatctcacacgacggcggtggcggagcattttgcactatggt 1558

                                                                        
Query: 266  ttcgtactcagaggcatggagaccaccatagatttgtatgctaaggatcttcttttctgg 325
            ||||||||| |  | |||||||||||| || | |||||| ||||| |||||||||| |||
Sbjct: 1557 ttcgtactcggcagaatggagaccaccgtacacttgtatactaagaatcttcttttgtgg 1498

                             
Query: 326  tgcgccgaccttgacat 342
            |||   |||||||||||
Sbjct: 1497 tgcattgaccttgacat 1481
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>gb|AC153595.27| Mus musculus 6 BAC RP23-140J24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 225736

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 103    aaaatacaagttgaatgtaaataaga 128
              |||||||||||||||||||| |||||
Sbjct: 189037 aaaatacaagttgaatgtaattaaga 189062
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>gb|AC149231.2| Pan troglodytes BAC clone CH251-481H1 from 7, complete sequence
          Length = 217836

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    tgaatatatcagttattcgat 231
              |||||||||||||||||||||
Sbjct: 108877 tgaatatatcagttattcgat 108857
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>gb|AY692766.1| Saccharomyces cerevisiae clone FLH112911.01X YFR005C gene, complete
           cds
          Length = 1347

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 12  caacatgtaaaacttcaaact 32
           |||||||||||||||||||||
Sbjct: 297 caacatgtaaaacttcaaact 277
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>gb|AC147094.2| Pan troglodytes BAC clone RP43-52H15 from 7, complete sequence
          Length = 183596

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   tgaatatatcagttattcgat 231
             |||||||||||||||||||||
Sbjct: 45647 tgaatatatcagttattcgat 45627
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>gb|AC142338.1| Pan troglodytes BAC clone RP43-41H4 from 7, complete sequence
          Length = 186208

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  tgaatatatcagttattcgat 231
            |||||||||||||||||||||
Sbjct: 6103 tgaatatatcagttattcgat 6123
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>gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163246

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    acttcaaactaatatgtatgg 43
             |||||||||||||||||||||
Sbjct: 67922 acttcaaactaatatgtatgg 67942
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>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 73     catttgtcccacacattattttctt 97
              ||||||||||||||||| |||||||
Sbjct: 161413 catttgtcccacacattgttttctt 161437
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>gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosome 18, complete
             sequence
          Length = 195721

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 73    catttgtcccacacattattttctt 97
             ||||||||||||||||| |||||||
Sbjct: 98090 catttgtcccacacattgttttctt 98114
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>gb|AC083875.1|AC083875 Homo sapiens chromosome 7 clone RP11-699P13, complete sequence
          Length = 150913

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    tgaatatatcagttattcgat 231
              |||||||||||||||||||||
Sbjct: 108966 tgaatatatcagttattcgat 108986
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>gb|AC091534.7| Homo sapiens 12 BAC RP11-404O18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185576

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    aaaatacaagttgaatgtaaa 123
              |||||||||||||||||||||
Sbjct: 180277 aaaatacaagttgaatgtaaa 180297
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>dbj|AP006351.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT04E21, TM0336,
           complete sequence
          Length = 113233

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 144 tcctatagcttcatctgacca 164
           |||||||||||||||||||||
Sbjct: 799 tcctatagcttcatctgacca 779
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>dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI complete DNA sequence
          Length = 270148

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     caacatgtaaaacttcaaact 32
              |||||||||||||||||||||
Sbjct: 155571 caacatgtaaaacttcaaact 155591
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>ref|NM_115484.2| Arabidopsis thaliana unknown protein AT3G56260 mRNA, complete cds
          Length = 1010

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 88  ttattttctttaggaaaaat 107
           ||||||||||||||||||||
Sbjct: 26  ttattttctttaggaaaaat 7
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>gb|AC160527.9| Mus musculus chromosome 7, clone RP24-269P21, complete sequence
          Length = 161504

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 290    accatagatttgtatgctaaggat 313
              ||||| ||||||||||||||||||
Sbjct: 160293 accattgatttgtatgctaaggat 160316
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>gb|AC158136.11| Mus musculus chromosome 7, clone RP23-58I15, complete sequence
          Length = 250563

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 290   accatagatttgtatgctaaggat 313
             ||||| ||||||||||||||||||
Sbjct: 23601 accattgatttgtatgctaaggat 23624
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>gb|AC145817.1| Pan troglodytes BAC clone RP43-6C4 from 7, complete sequence
          Length = 134049

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    agtgagaacatttgtcccac 84
             ||||||||||||||||||||
Sbjct: 85843 agtgagaacatttgtcccac 85862
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>gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete sequence
          Length = 129414

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 102   aaaaatacaagttgaatgtaaata 125
             ||||||||||||||| ||||||||
Sbjct: 77593 aaaaatacaagttgattgtaaata 77616
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>emb|AL513475.13| Human DNA sequence from clone RP11-277I20 on chromosome 6 Contains part
              of the UTRN gene for utrophin (homologous to dystrophin)
              (DRP, DRP1, DMDL), a novel pseudogene similar to
              hypothetical protein HT023 and a novel pseudogene, complete
              sequence
          Length = 191752

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 210    ctgaatatatcagttattcgatgc 233
              ||||||||||||||||||| ||||
Sbjct: 141168 ctgaatatatcagttattctatgc 141191
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>emb|AL138749.13| Human DNA sequence from clone RP11-289F5 on chromosome 9q21.31-22.1
             Contains a novel gene, complete sequence
          Length = 186246

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   ttgacataattatcaaagaa 355
             ||||||||||||||||||||
Sbjct: 11931 ttgacataattatcaaagaa 11912
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>gb|AC108510.3| Homo sapiens chromosome 7 clone RP11-98O9, complete sequence
          Length = 74746

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    agtgagaacatttgtcccac 84
             ||||||||||||||||||||
Sbjct: 31688 agtgagaacatttgtcccac 31669
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>emb|AL163763.1|ATF18O21 Arabidopsis thaliana DNA chromosome 3, BAC clone F18O21
          Length = 99492

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ttattttctttaggaaaaat 107
             ||||||||||||||||||||
Sbjct: 71939 ttattttctttaggaaaaat 71958
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>emb|BX510940.8| Zebrafish DNA sequence from clone DKEYP-69C1 in linkage group 21,
              complete sequence
          Length = 172605

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 16     atgtaaaacttcaaactaatatgt 39
              ||||||||||||||| ||||||||
Sbjct: 113691 atgtaaaacttcaaaataatatgt 113714
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>gb|AC027152.11| Homo sapiens chromosome 17, clone RP11-456D7, complete sequence
          Length = 132735

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     taaaacttcaaactaatatg 38
              ||||||||||||||||||||
Sbjct: 101957 taaaacttcaaactaatatg 101976
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>gb|AC026225.5| Homo sapiens chromosome 10 clone RP11-78C6, complete sequence
          Length = 201173

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     acatgtaaaacttcaaacta 33
              ||||||||||||||||||||
Sbjct: 195685 acatgtaaaacttcaaacta 195704
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>gb|AC090214.3| Homo sapiens chromosome 18, clone RP11-800G9, complete sequence
          Length = 95648

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    attattttctttaggaaaaa 106
             ||||||||||||||||||||
Sbjct: 32992 attattttctttaggaaaaa 32973
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>gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, complete sequence
          Length = 191528

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 88    ttattttctttaggaaaaatacaa 111
             |||||||||||| |||||||||||
Sbjct: 59280 ttattttctttaagaaaaatacaa 59303
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>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome
          Length = 280334

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     gaatatattcagcctagcca 62
              ||||||||||||||||||||
Sbjct: 258321 gaatatattcagcctagcca 258340
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>gb|DQ163920.1| Bacteriophage SD1-M, complete genome
          Length = 281083

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     gaatatattcagcctagcca 62
              ||||||||||||||||||||
Sbjct: 259070 gaatatattcagcctagcca 259089
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>gb|AF077255.1|AF077255 Littorina scutulata isolate Scut18 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077254.1|AF077254 Littorina scutulata isolate Scut17 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077253.1|AF077253 Littorina scutulata isolate Scut16 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077251.1|AF077251 Littorina scutulata isolate Scut14 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077249.1|AF077249 Littorina scutulata isolate Scut12 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077248.1|AF077248 Littorina scutulata isolate Scut11 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077247.1|AF077247 Littorina scutulata isolate Scut10 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077246.1|AF077246 Littorina scutulata isolate Scut9 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077244.1|AF077244 Littorina scutulata isolate Scut7 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077243.1|AF077243 Littorina scutulata isolate Scut6 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077242.1|AF077242 Littorina scutulata isolate Scut5 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077239.1|AF077239 Littorina scutulata isolate Scut2 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF077238.1|AF077238 Littorina scutulata isolate Scut1 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF023609.1|AF023609 Littorina subrotundata cytochrome b gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF023608.1|AF023608 Littorina subrotundata cytochrome b gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AF023607.1|AF023607 Littorina subrotundata cytochrome b gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromosome unknown, complete
              sequence
          Length = 267345

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     taaaacttcaaactaatatgtatg 42
              |||||||||||| |||||||||||
Sbjct: 230319 taaaacttcaaagtaatatgtatg 230296
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>gb|U89697.1|OTU89697 Oxytricha trifallax DNA polymerase alpha gene, micronuclear sequence
          Length = 6500

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  acatcatgaacaatcttttc 268
            ||||||||||||||||||||
Sbjct: 2639 acatcatgaacaatcttttc 2658
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>gb|U46797.1|LHU46797 Littorina horikawai cytochrome b gene, mitochondrial gene encoding
           mitochondrial protein, partial cds
          Length = 671

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tttaggaaaaatacaagttgaatg 119
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
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>emb|AL671331.6| Mouse DNA sequence from clone RP23-126C18 on chromosome X, complete
             sequence
          Length = 107095

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tattttctttaggaaaaata 108
             ||||||||||||||||||||
Sbjct: 49501 tattttctttaggaaaaata 49520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,288,149
Number of Sequences: 3902068
Number of extensions: 4288149
Number of successful extensions: 91186
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91063
Number of HSP's gapped (non-prelim): 116
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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