ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANX1_RAT (P60570) Pannexin-1 30 2.0
2PANX1_PONPY (Q5REE3) Pannexin-1 30 2.0
3PANX1_MOUSE (Q9JIP4) Pannexin-1 30 2.0
4PANX1_HUMAN (Q96RD7) Pannexin-1 30 2.0
5EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocy... 29 4.5
6SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor 29 5.9

>PANX1_RAT (P60570) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 245 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 328
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_PONPY (Q5REE3) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 245 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 328
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 245 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 328
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 245 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 328
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocyst complex|
           component Sec5)
          Length = 884

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 312 G*RFCKWVKWPLRLSSAAVFTALIFSTSLINASFQNLFSCTH 437
           G +F KW   P  +S + +  +L  + SLI++  +N FS TH
Sbjct: 495 GDQFAKWPTVPADISRSNLQLSLKTTRSLISSLLENQFSLTH 536



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>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +3

Query: 39   YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 215
            YK+Y  ++ S+ +++       LPE  V  K+ TS+       ++F+ AG GP    +Q 
Sbjct: 1737 YKIYYWEADSQNETEKMKV-LFLPEPVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQG 1795

Query: 216  YFHLLAVGFINFLAFN 263
              H  A G  +FLAF+
Sbjct: 1796 RTHQAAPGAPSFLAFS 1811


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,954,537
Number of Sequences: 219361
Number of extensions: 889001
Number of successful extensions: 2424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2424
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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