Clone Name | rbastl50f02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY245454.1| Hordeum vulgare subsp. vulgare thioredoxin h isoform 1 mRNA, complete cds Length = 357 Score = 434 bits (219), Expect = e-118 Identities = 219/219 (100%) Strand = Plus / Minus Query: 211 ttaggtggatgcagaacccatgagggccactatcttggtatggatgtcatccttcctgcc 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 357 ttaggtggatgcagaacccatgagggccactatcttggtatggatgtcatccttcctgcc 298 Query: 271 accgacaacactgtccaccttctcaccgtccttgataaacaggaaggtcggcattgcctc 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 accgacaacactgtccaccttctcaccgtccttgataaacaggaaggtcggcattgcctc 238 Query: 331 aacattgtatgcttcagcgacgtccttcagctcatcaacatccaccttcaggaagatggc 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 aacattgtatgcttcagcgacgtccttcagctcatcaacatccaccttcaggaagatggc 178 Query: 391 cccagggaacttcttggcgtactcagcaaagactggggc 429 ||||||||||||||||||||||||||||||||||||||| Sbjct: 177 cccagggaacttcttggcgtactcagcaaagactggggc 139
>gb|AY072771.1| Triticum aestivum cultivar Soissons thioredoxin H mRNA, complete cds Length = 598 Score = 389 bits (196), Expect = e-105 Identities = 258/278 (92%), Gaps = 3/278 (1%) Strand = Plus / Minus Query: 155 aactacttacaccaggtgctggctcttattgatataaccgggcaatcactcttccctt-- 212 |||||||||||||||||||||||||||||||| | || ||| |||||||||||||| Sbjct: 416 aactacttacaccaggtgctggctcttattgacacaagaggggcatcactcttcccttct 357 Query: 213 -aggtggatgcagaacccatgagggccactatcttggtatggatgtcatccttcctgcca 271 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 356 taggcagatgcagaacccatgagggccactatcttggtatggatatcatccttcctgcca 297 Query: 272 ccgacaacactgtccaccttctcaccgtccttgataaacaggaaggtcggcattgcctca 331 ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct: 296 ccgacaacagtgtccaccttcgcaccatccttgataaacaggaaggtcggcattgcctca 237 Query: 332 acattgtatgcttcagcgacgtccttcagctcatcaacatccaccttcaggaagatggcc 391 || ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 236 acgttgtatgcttcagcgacgtccttcagctcgtcaacgtccaccttcaggaaaatggcg 177 Query: 392 ccagggaacttcttggcgtactcagcaaagactggggc 429 |||||||||||||||||||||||||||||||||||||| Sbjct: 176 ccagggaacttcttggcgtactcagcaaagactggggc 139 Score = 85.7 bits (43), Expect = 1e-13 Identities = 105/121 (86%), Gaps = 6/121 (4%) Strand = Plus / Minus Query: 45 tccaaacttcacaat--agcaactgtagcaaa-cattaggcactgtaattcaaaacaacc 101 |||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct: 559 tccaaacttcacaacgaagcaactgtagcaaaacattaggtactgtaattcagaacaacc 500 Query: 102 ggtgc--atatcttaag-tctgaactctaaaatgaatcaacataaagttcagtcacaact 158 ||||| || ||| ||| ||||||||||||| |||||| || ||||||||||||| ||| Sbjct: 499 ggtgcaaatgtctgaagttctgaactctaaaccgaatcatcacaaagttcagtcacgact 440 Query: 159 a 159 | Sbjct: 439 a 439
>ref|XM_476912.1| Oryza sativa (japonica cultivar-group), mRNA Length = 600 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 353 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 367 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 308 Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 307 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 248 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 247 cagcgaacactggggc 232
>dbj|D21310.1|RICSS396 Oryza sativa SS396 mRNA for thioredoxin, partial sequence Length = 320 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 353 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 192 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 133 Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 132 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 73 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 72 cagcgaacactggggc 57
>dbj|AK121423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N23, full insert sequence Length = 733 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 353 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 368 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 309 Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 308 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 249 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 248 cagcgaacactggggc 233
>dbj|AK059196.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A03, full insert sequence Length = 600 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 353 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 367 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 308 Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 307 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 248 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 247 cagcgaacactggggc 232
>dbj|D21836.1|RICTH Oryza sativa (japonica cultivar-group) mRNA for thioredoxin h, complete cds Length = 687 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 353 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 330 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 271 Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 270 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 211 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 210 cagcgaacactggggc 195
>gb|U92541.1|OSU92541 Oryza sativa thioredoxin h mRNA, complete cds Length = 601 Score = 135 bits (68), Expect = 1e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgtatgcttcagcgacgt 353 |||| |||||||| || |||||||||||||||||||| |||||||| |||||| || | Sbjct: 359 caccatccttgatgaataggaaggtcggcattgcctcgacattgtacttttcagcaactt 300 Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 299 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 240 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 239 cagcgaacactggggc 224
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 4606975 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 4607034 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 4607035 cagcgaacactggggc 4607050 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgta 339 |||| |||||||| || |||||||||||||||||||| |||||||| Sbjct: 4606834 caccatccttgatgaataggaaggtcggcattgcctcgacattgta 4606879
>dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_B08 Length = 119212 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 72315 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 72374 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 72375 cagcgaacactggggc 72390 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgta 339 |||| |||||||| || |||||||||||||||||||| |||||||| Sbjct: 72174 caccatccttgatgaataggaaggtcggcattgcctcgacattgta 72219
>dbj|AP004384.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0506C07 Length = 123451 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 14348 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 14407 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 14408 cagcgaacactggggc 14423 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgta 339 |||| |||||||| || |||||||||||||||||||| |||||||| Sbjct: 14207 caccatccttgatgaataggaaggtcggcattgcctcgacattgta 14252
>dbj|D26547.1|RICRTH Oryza sativa gene for thioredoxin h, complete cds Length = 2906 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 354 ccttcagctcatcaacatccaccttcaggaagatggccccagggaacttcttggcgtact 413 ||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||| | Sbjct: 2334 ccttcagctcatcaacatcaaccttcaggaagacagcaccagggaactttttggcgtatt 2275 Query: 414 cagcaaagactggggc 429 |||| || |||||||| Sbjct: 2274 cagcgaacactggggc 2259 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctcaacattgta 339 |||| |||||||| || |||||||||||||||||||| |||||||| Sbjct: 2475 caccatccttgatgaataggaaggtcggcattgcctcgacattgta 2430
>dbj|D87984.1| Fagopyrum esculentum mRNA for thioredoxin, complete cds Length = 595 Score = 60.0 bits (30), Expect = 6e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 318 tcggcattgcctcaacattgtatgcttcagcgacgtccttcagctcatcaacatccac 375 ||||||||||||| || |||||| | |||||||| ||||||| |||||||||||||| Sbjct: 332 tcggcattgcctccaccttgtattcctcagcgacatccttcaaatcatcaacatccac 275
>gb|AY335159.1| Fagopyrum tataricum thioredoxin mRNA, partial cds Length = 328 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Minus Query: 314 aaggtcggcattgcctcaacattgtatgcttcagcgacgtccttcagctcatcaacatcc 373 ||||||||||||||||| || |||||| | |||||||| || || |||||||||||| Sbjct: 110 aaggtcggcattgcctccactttgtattcctcagcgacatcattacaatcatcaacatcc 51 Query: 374 acctt 378 ||||| Sbjct: 50 acctt 46
>emb|Z70677.1|RCTHIORXN R.communis mRNA for thioredoxin Length = 603 Score = 46.1 bits (23), Expect = 0.093 Identities = 29/31 (93%) Strand = Plus / Minus Query: 355 cttcagctcatcaacatccaccttcaggaag 385 |||||| ||||| |||||||||||||||||| Sbjct: 235 cttcagttcatccacatccaccttcaggaag 205
>gb|DQ083183.1| Oryza sativa (indica cultivar-group) clone 4S1C03 mRNA sequence Length = 325 Score = 44.1 bits (22), Expect = 0.37 Identities = 34/38 (89%) Strand = Plus / Minus Query: 294 caccgtccttgataaacaggaaggtcggcattgcctca 331 |||| |||||||| || |||||||||||||||| |||| Sbjct: 38 caccatccttgatgaataggaaggtcggcattgtctca 1
>gb|DQ306739.1| Hevea brasiliensis isolate SSH10 mRNA sequence Length = 327 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 362 tcatcaacatccaccttcaggaagat 387 ||||| |||||||||||||||||||| Sbjct: 248 tcatccacatccaccttcaggaagat 273
>ref|NM_101829.2| Arabidopsis thaliana ATTRX4; thiol-disulfide exchange intermediate AT1G19730 (ATTRX4) mRNA, complete cds Length = 652 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 260 tcatcaacatccaccttgaagaagatggc 232
>gb|AC024609.2| Arabidopsis thaliana chromosome I BAC F14P1 genomic sequence, complete sequence Length = 90341 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 39036 tcatcaacatccaccttgaagaagatggc 39008
>ref|XM_541527.2| PREDICTED: Canis familiaris hypothetical LOC484412 (LOC484412), mRNA Length = 2580 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 aggaagatggccccagggaac 400 ||||||||||||||||||||| Sbjct: 2213 aggaagatggccccagggaac 2233
>ref|XM_503146.1| Yarrowia lipolytica CLIB122, YALI0D22308g predicted mRNA Length = 333 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 269 ccaccgacaacactgtccaccttct 293 ||||||| ||||||||||||||||| Sbjct: 170 ccaccgagaacactgtccaccttct 146
>emb|Z35473.1|ATTHIRED1 A.thaliana (GREN) mRNA for thioredoxin Length = 642 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 249 tcatcaacatccaccttgaagaagatggc 221
>emb|BX818339.1|CNS0ACPU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL73ZF03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 629 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 254 tcatcaacatccaccttgaagaagatggc 226
>emb|BX841902.1|CNS09Y73 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL20ZE03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 702 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 243 tcatcaacatccaccttgaagaagatggc 215
>gb|BT004710.1| Arabidopsis thaliana At1g19730 gene, complete cds Length = 360 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 209 tcatcaacatccaccttgaagaagatggc 181
>gb|AC007797.7|AC007797 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete sequence Length = 119942 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 99302 tcatcaacatccaccttgaagaagatggc 99274
>gb|AY088698.1| Arabidopsis thaliana clone 9219 mRNA, complete sequence Length = 590 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 260 tcatcaacatccaccttgaagaagatggc 232
>dbj|AK118542.1| Arabidopsis thaliana At1g19730 mRNA for putative thioredoxin, complete cds, clone: RAFL19-77-A10 Length = 556 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 231 tcatcaacatccaccttgaagaagatggc 203
>gb|U35828.1|ATU35828 Arabidopsis thaliana thioredoxin h (TRX4) gene, partial cds Length = 829 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 tcatcaacatccaccttcaggaagatggc 390 ||||||||||||||||| | ||||||||| Sbjct: 607 tcatcaacatccaccttgaagaagatggc 579
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 ccttcagctcatcaacatcca 374 ||||||||||||||||||||| Sbjct: 6342186 ccttcagctcatcaacatcca 6342206
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 269 ccaccgacaacactgtccaccttct 293 ||||||| ||||||||||||||||| Sbjct: 2837406 ccaccgagaacactgtccaccttct 2837430
>gb|AC145545.2| Homo sapiens chromosome UNKNOWN clone RP11-1365M9, complete sequence Length = 184813 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 99067 ggtggatgcagaacccatga 99048
>ref|XM_475666.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 366 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 299 tccttgataaacaggaaggtcggcattgcctcaaca 334 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 287 tccttcataaacaggaatgttggcatagcctcaaca 252
>ref|XM_586062.2| PREDICTED: Bos taurus similar to discs large homolog 7 (LOC509161), partial mRNA Length = 3198 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ccttaggtggatgcagaacc 228 |||||||||||||||||||| Sbjct: 2839 ccttaggtggatgcagaacc 2858
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 299 tccttgataaacaggaaggtcggcattgcctcaaca 334 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 34525 tccttcataaacaggaatgttggcatagcctcaaca 34490
>gb|AY089550.1| Drosophila melanogaster LD26837 full insert cDNA Length = 4025 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 acatccaccttcaggaagatggcc 391 |||||||| ||||||||||||||| Sbjct: 3229 acatccactttcaggaagatggcc 3206
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 154471 ggtggatgcagaacccatga 154490
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 131606 ggtggatgcagaacccatga 131625
>gb|AC145616.2| Homo sapiens BAC clone RP11-1172A19 from UL, complete sequence Length = 172810 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 47765 ggtggatgcagaacccatga 47746
>gb|AC145547.3| Homo sapiens BAC clone RP11-1437O6 from UL, complete sequence Length = 185637 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 120315 ggtggatgcagaacccatga 120296
>gb|AC144916.3| Homo sapiens BAC clone RP11-15L7 from UL, complete sequence Length = 158759 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 156142 ggtggatgcagaacccatga 156123
>emb|AL845321.4| Human DNA sequence from clone RP11-236F9 on chromosome 9 Contains an aquaporin 7(AQP7) pseudogene, a novel gene, three novel pseudogenes, a pseudogene similar to part of BMS1-like, ribosome assembly protein (yeast)(BMS1L) and a CpG island, complete sequence Length = 158462 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 155874 ggtggatgcagaacccatga 155855
>emb|AL442223.13| Human DNA sequence from clone RP11-426P2 on chromosome 1 Contains the 5' end of a variant of the DAB1 gene for disabled homolog 1 (Drosophila) and a CpG island, complete sequence Length = 54683 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 cttcacaatagcaactgtagcaaa 74 |||||||||||||| ||||||||| Sbjct: 27256 cttcacaatagcaagtgtagcaaa 27279
>emb|AL133173.20| Human DNA sequence from clone RP11-453N3 on chromosome 10 Contains a RING finger protein 18 (RNF18) pseudogene, an actin-related protein 3 homolog (yeast) (ACTR3) pseudogene, a poly(A) cytoplasmic binding protein 3 (PABPC3) pseudogene, a gene for a novel protein similar to ATP-binding cassette sub-family D (ALD) member 1 (ABCD1), two novel genes and two CpG islands, complete sequence Length = 206192 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 24409 ggtggatgcagaacccatga 24428
>gb|AC132872.17| Homo sapiens chromosome 17, clone RP13-516M14, complete sequence Length = 171569 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gatgtcatccttcctgccaccgac 276 |||| ||||||||||||||||||| Sbjct: 48447 gatgacatccttcctgccaccgac 48470
>emb|CR381572.5| Human DNA sequence from clone bP-2168N6 on chromosome 21, complete sequence Length = 184355 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 153548 ggtggatgcagaacccatga 153529
>gb|AC093500.2| Drosophila melanogaster 3L BAC RP98-29P5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173558 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 acatccaccttcaggaagatggcc 391 |||||||| ||||||||||||||| Sbjct: 67570 acatccactttcaggaagatggcc 67547
>gb|AC113436.28| Pan troglodytes clone rp43-97f19, complete sequence Length = 166631 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 104423 ggtggatgcagaacccatga 104404
>ref|NM_079214.2| Drosophila melanogaster Thioredoxin-like CG5495-RA (Txl), mRNA Length = 1151 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 acatccaccttcaggaagatggcc 391 |||||||| ||||||||||||||| Sbjct: 342 acatccactttcaggaagatggcc 319
>gb|AC020760.6| Homo sapiens chromosome 16 clone RP11-151C19, complete sequence Length = 188872 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 82096 ggtggatgcagaacccatga 82115
>ref|XM_625516.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_550), partial mRNA Length = 7059 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aataattatccaaacttcac 56 |||||||||||||||||||| Sbjct: 981 aataattatccaaacttcac 1000
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 299 tccttgataaacaggaaggtcggcattgcctcaaca 334 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 24965672 tccttcataaacaggaatgttggcatagcctcaaca 24965637
>gb|AC034151.6| Homo sapiens BAC clone RP11-168J1 from 2, complete sequence Length = 157666 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 72290 ggtggatgcagaacccatga 72271
>gb|AC128677.4| Homo sapiens BAC clone RP11-271A22 from 2, complete sequence Length = 158087 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 92883 ggtggatgcagaacccatga 92864
>gb|AC012640.12| Homo sapiens chromosome 5 clone CTD-2256P15, complete sequence Length = 145122 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gtggatgcagaacccatgag 234 |||||||||||||||||||| Sbjct: 39313 gtggatgcagaacccatgag 39294
>gb|AF143404.1|AF143404 Drosophila melanogaster thioredoxin-like protein TXL (txl) mRNA, complete cds Length = 1087 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 acatccaccttcaggaagatggcc 391 |||||||| ||||||||||||||| Sbjct: 300 acatccactttcaggaagatggcc 277
>emb|BX546448.4| Human DNA sequence from clone RP11-509J10 on chromosome 22, complete sequence Length = 172149 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggtggatgcagaacccatga 233 |||||||||||||||||||| Sbjct: 29112 ggtggatgcagaacccatga 29131
>emb|X78822.1|CRTRXH C.reinhardtii mRNA for thioredoxin-h Length = 1285 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 tcaacatccaccttcaggaagatg 388 |||||||| ||||||||||||||| Sbjct: 659 tcaacatcgaccttcaggaagatg 636 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 tcaacatccaccttcaggaagatg 388 |||||||| ||||||||||||||| Sbjct: 322 tcaacatcgaccttcaggaagatg 345
>emb|X80887.1|CRTRXH1 C.reinhardtii Trx h gene Length = 1450 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 tcaacatccaccttcaggaagatg 388 |||||||| ||||||||||||||| Sbjct: 574 tcaacatcgaccttcaggaagatg 551
>dbj|AK106758.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D09, full insert sequence Length = 3740 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 299 tccttgataaacaggaaggtcggcattgcctcaaca 334 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 432 tccttcataaacaggaatgttggcatagcctcaaca 397
>dbj|AK059385.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-G10, full insert sequence Length = 682 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 299 tccttgataaacaggaaggtcggcattgcctcaaca 334 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 401 tccttcataaacaggaatgttggcatagcctcaaca 366
>gb|U83976.1|FCU83976 Feline calicivirus capsid protein gene, partial cds Length = 617 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 ggcactgtaattcaaaacaa 99 |||||||||||||||||||| Sbjct: 244 ggcactgtaattcaaaacaa 263
>gb|AY104876.1| Zea mays PCO064560 mRNA sequence Length = 756 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 371 tccaccttcaggaagatggccccagggaacttcttggcgt 410 |||||||||||||||| | || || |||||||||||||| Sbjct: 308 tccaccttcaggaagacgacctgagtgaacttcttggcgt 269
>gb|AE003565.3| Drosophila melanogaster chromosome 3L, section 20 of 83 of the complete sequence Length = 284268 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 acatccaccttcaggaagatggcc 391 |||||||| ||||||||||||||| Sbjct: 236807 acatccactttcaggaagatggcc 236784
>gb|AC153893.3| Mus musculus 10 BAC RP23-124O20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228194 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 tagacagaataattatccaaactt 53 ||||||||| |||||||||||||| Sbjct: 68010 tagacagaaaaattatccaaactt 68033
>dbj|AP006105.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT14C19, TM0190, complete sequence Length = 125299 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tcacaatagcaactgtagca 72 |||||||||||||||||||| Sbjct: 92184 tcacaatagcaactgtagca 92165
>dbj|AB053294.1| Oryza sativa (japonica cultivar-group) RTRXH2 mRNA for thioredoxin h, complete cds Length = 740 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 299 tccttgataaacaggaaggtcggcattgcctcaaca 334 ||||| ||||||||||| || ||||| ||||||||| Sbjct: 402 tccttcataaacaggaatgttggcatagcctcaaca 367 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,902,110 Number of Sequences: 3902068 Number of extensions: 3902110 Number of successful extensions: 70098 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69911 Number of HSP's gapped (non-prelim): 181 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)