ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTP1_XENLA (Q8JFZ2) Glutathione S-transferase P 1 (EC 2.5.1.18)... 29 6.3
2HXC6_XENLA (P02832) Homeobox protein Hox-C6 (XlHbox-1) (AC1) [Co... 29 6.3
3VL1_HPV18 (P06794) Major capsid protein L1 29 6.3

>GSTP1_XENLA (Q8JFZ2) Glutathione S-transferase P 1 (EC 2.5.1.18) (XlGSTP1-1)|
           (GST class-pi)
          Length = 212

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 78  VQIPQWYHEADVEKEEKIFLDSDKYQQG 161
           VQIP W+   D  K+E +F    ++Q G
Sbjct: 34  VQIPDWFSGKDARKKEAVFGQLPQFQDG 61



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>HXC6_XENLA (P02832) Homeobox protein Hox-C6 (XlHbox-1) (AC1) [Contains:|
           Homeobox protein Hox-C6 PRII; Homeobox protein Hox-C6
           PRI]
          Length = 234

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 165 AKSAQGRVYSNP*FTPNKNVATFSSVG 245
           A  AQ R+YS+P +TP  NV   SS G
Sbjct: 42  AAVAQNRIYSSPFYTPQDNVVFGSSRG 68



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>VL1_HPV18 (P06794) Major capsid protein L1|
          Length = 568

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 108 DVEKEEKIFLDSDKYQQGRAKSAQGRVYSNP*FTPNKNVATFSSVGSPP 254
           +V+ +EK  LD D+Y  GR    Q  +   P   P K  A  ++  S P
Sbjct: 510 NVDLKEKFSLDLDQYPLGRKFLVQAGLRRKPTIGPRKRSAPSATTSSKP 558


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,670,594
Number of Sequences: 219361
Number of extensions: 1247397
Number of successful extensions: 3012
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3011
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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