ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 117 2e-23
2gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 117 2e-23
3gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 117 2e-23
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
5dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
6dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
7dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 2e-23
8dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 2e-23
9gb|BT016256.1| Zea mays clone Contig89 mRNA sequence 115 9e-23
10gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 44 0.28
11emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 44 0.28
12gb|AY112472.1| Zea mays CL152_1 mRNA sequence 44 0.28
13gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 42 1.1
14gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 1.1
15emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 42 1.1
16emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chro... 42 1.1
17ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 ... 40 4.4
18gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, al... 40 4.4
19gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete se... 40 4.4
20gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complet... 40 4.4
21gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence 40 4.4
22emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in... 40 4.4
23emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k... 40 4.4
24emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 s... 40 4.4
25gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, compl... 40 4.4
26ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, ... 40 4.4
27gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome ... 40 4.4
28gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12... 40 4.4
29gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence 40 4.4
30emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in... 40 4.4
31emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Co... 40 4.4
32gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, comple... 40 4.4
33gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 4.4
34emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ... 40 4.4
35dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.4
36dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.4
37gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 4.4
38gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complet... 40 4.4
39gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, co... 40 4.4
40gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subu... 40 4.4
41gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic s... 40 4.4 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                        
Query: 223  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 282
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3153 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3094

                                                       
Query: 283  ccttcttcgccttctcctggaactgttccaggttctcgagagc 325
            ||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 3093 ccttctttgctttctcctggaactgttccagattctggagagc 3051



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 26   ttattgagcttaggggaaaaacaatgtat 54
            ||||| || ||||||||||||||||||||
Sbjct: 3443 ttattaagtttaggggaaaaacaatgtat 3415
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>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            gene, complete cds
          Length = 5478

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                        
Query: 223  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 282
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 5271 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 5212

                                                       
Query: 283  ccttcttcgccttctcctggaactgttccaggttctcgagagc 325
            ||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 5211 ccttctttgctttctcctggaactgttccagattctggagagc 5169
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>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            mRNA, complete cds
          Length = 2961

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                        
Query: 223  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 282
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 2932 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 2873

                                                       
Query: 283  ccttcttcgccttctcctggaactgttccaggttctcgagagc 325
            ||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 2872 ccttctttgctttctcctggaactgttccagattctggagagc 2830
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                            
Query: 223      ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 282
                |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 19118661 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 19118720

                                                           
Query: 283      ccttcttcgccttctcctggaactgttccaggttctcgagagc 325
                ||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 19118721 ccttctttgctttctcctggaactgttccagattctggagagc 19118763



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 26       ttattgagcttaggggaaaaacaatgtat 54
                ||||| || ||||||||||||||||||||
Sbjct: 19118371 ttattaagtttaggggaaaaacaatgtat 19118399
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                         
Query: 223   ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 282
             |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 16910 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 16969

                                                        
Query: 283   ccttcttcgccttctcctggaactgttccaggttctcgagagc 325
             ||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 16970 ccttctttgctttctcctggaactgttccagattctggagagc 17012



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 26    ttattgagcttaggggaaaaacaatgtat 54
             ||||| || ||||||||||||||||||||
Sbjct: 16620 ttattaagtttaggggaaaaacaatgtat 16648
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                          
Query: 223    ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 282
              |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 124182 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 124241

                                                         
Query: 283    ccttcttcgccttctcctggaactgttccaggttctcgagagc 325
              ||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 124242 ccttctttgctttctcctggaactgttccagattctggagagc 124284



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 26     ttattgagcttaggggaaaaacaatgtat 54
              ||||| || ||||||||||||||||||||
Sbjct: 123892 ttattaagtttaggggaaaaacaatgtat 123920
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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                        
Query: 223  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 282
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3151 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3092

                                                       
Query: 283  ccttcttcgccttctcctggaactgttccaggttctcgagagc 325
            ||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 3091 ccttctttgctttctcctggaactgttccagattctggagagc 3049



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 26   ttattgagcttaggggaaaaacaatgtat 54
            ||||| || ||||||||||||||||||||
Sbjct: 3441 ttattaagtttaggggaaaaacaatgtat 3413
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>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score =  117 bits (59), Expect = 2e-23
 Identities = 92/103 (89%)
 Strand = Plus / Minus

                                                                        
Query: 223  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 282
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 1169 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 1110

                                                       
Query: 283  ccttcttcgccttctcctggaactgttccaggttctcgagagc 325
            ||||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 1109 ccttctttgctttctcctggaactgttccagattctggagagc 1067



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 26   ttattgagcttaggggaaaaacaatgtat 54
            ||||| || ||||||||||||||||||||
Sbjct: 1459 ttattaagtttaggggaaaaacaatgtat 1431
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>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence
          Length = 1657

 Score =  115 bits (58), Expect = 9e-23
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagcctttccttcttc 290
            ||||| |||||||| |||||||| ||||| |||||||| |  ||||||||||||||||| 
Sbjct: 1350 tgctcgtcctcgtccgattcaacatctccgtactgccaaatccgcagcctttccttcttt 1291

                                                      
Query: 291  gccttctcctggaactgttccaggttctcgagagctgtcttc 332
            ||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 1290 gccttgtcctggaactgttccaggttctggagagccgtcttc 1249
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>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 43    aaaacaatgtatatagttctct 64
             ||||||||||||||||||||||
Sbjct: 97578 aaaacaatgtatatagttctct 97599
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>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
              complete sequence
          Length = 165993

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 107    ttcatataagctctcgactgagtttc 132
              |||||||| |||||||||||||||||
Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306
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>gb|AY112472.1| Zea mays CL152_1 mRNA sequence
          Length = 1436

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 303 aactgttccaggttctcgagagctgtcttc 332
           |||||||||||||||| |||||| ||||||
Sbjct: 976 aactgttccaggttctggagagccgtcttc 947
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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     ttattgagcttaggggaaaaa 46
              |||||||||||||||||||||
Sbjct: 246866 ttattgagcttaggggaaaaa 246886
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>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    ttattgagcttaggggaaaaa 46
             |||||||||||||||||||||
Sbjct: 88447 ttattgagcttaggggaaaaa 88467
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>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 94     ttcttactaagttttcatata 114
              |||||||||||||||||||||
Sbjct: 141218 ttcttactaagttttcatata 141198
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>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete
              sequence
          Length = 195413

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      gtccacaaaggacacagacct 26
              |||||||||||||||||||||
Sbjct: 152418 gtccacaaaggacacagacct 152438
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>ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 mRNA, complete cds
          Length = 3295

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 234 tcttcctcgtcggattcaacgtctccat 261
           ||||| ||||||| ||||||||||||||
Sbjct: 755 tcttcttcgtcggcttcaacgtctccat 728
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>gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide,
           mRNA (cDNA clone MGC:72546 IMAGE:5598014), complete cds
          Length = 3700

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cctttccttcttcgccttct 297
           ||||||||||||||||||||
Sbjct: 338 cctttccttcttcgccttct 319
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>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence
          Length = 51685

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 41    gaaaaacaatgtatatagttctct 64
             |||||||||| |||||||||||||
Sbjct: 28326 gaaaaacaatatatatagttctct 28303
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>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence
          Length = 192092

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    atatagttctcttcttctaatggc 76
             |||| |||||||||||||||||||
Sbjct: 99542 atatggttctcttcttctaatggc 99565
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>gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence
          Length = 1920

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 234 tcttcctcgtcggattcaacgtctccat 261
           ||||| ||||||| ||||||||||||||
Sbjct: 746 tcttcttcgtcggcttcaacgtctccat 719
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>emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in linkage group 5, complete
              sequence
          Length = 185915

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     ataaatatagtctctctttc 96
              ||||||||||||||||||||
Sbjct: 181778 ataaatatagtctctctttc 181797
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>emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE
          Length = 123977

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 287   cttcgccttctcctggaactgttccaggttct 318
             |||| |||||||||||||||  ||||||||||
Sbjct: 51074 cttcaccttctcctggaactcctccaggttct 51105
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>emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 subunit exon 2
          Length = 1813

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 278  cctttccttcttcgccttct 297
            ||||||||||||||||||||
Sbjct: 1771 cctttccttcttcgccttct 1752
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>gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, complete sequence
          Length = 125123

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    tgtatatagttctcttcttc 69
             ||||||||||||||||||||
Sbjct: 87138 tgtatatagttctcttcttc 87157
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>ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide
           (Atp1a1), mRNA
          Length = 3636

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cctttccttcttcgccttct 297
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308
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>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14,
             complete sequence
          Length = 151836

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aaaacaatgtatatagttct 62
             ||||||||||||||||||||
Sbjct: 34730 aaaacaatgtatatagttct 34711
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>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 234   tcttcctcgtcggattcaacgtctccat 261
             ||||| ||||||| ||||||||||||||
Sbjct: 12990 tcttcttcgtcggcttcaacgtctccat 13017
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>gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence
          Length = 7342

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   atatagttctcttcttctaatggc 76
            |||| |||||||||||||||||||
Sbjct: 3933 atatggttctcttcttctaatggc 3910
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>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5,
             complete sequence
          Length = 160041

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ataaatatagtctctctttc 96
             ||||||||||||||||||||
Sbjct: 88307 ataaatatagtctctctttc 88326
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>emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS70ZB10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2808

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 234 tcttcctcgtcggattcaacgtctccat 261
           ||||| ||||||| ||||||||||||||
Sbjct: 687 tcttcttcgtcggcttcaacgtctccat 660
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>gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, complete sequence
          Length = 111857

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    tcttctaatggcataaatat 84
             ||||||||||||||||||||
Sbjct: 84384 tcttctaatggcataaatat 84403
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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   ccaaaactttcatatctaaa 161
             ||||||||||||||||||||
Sbjct: 29599 ccaaaactttcatatctaaa 29580
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>emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ATPase alpha-1 chain
           precursor (atp1a1 gene)
          Length = 3407

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cctttccttcttcgccttct 297
           ||||||||||||||||||||
Sbjct: 104 cctttccttcttcgccttct 85
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>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete
              sequences
          Length = 175110

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    aaactttcatatctaaacca 164
              ||||||||||||||||||||
Sbjct: 139050 aaactttcatatctaaacca 139031
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>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete
             sequences
          Length = 170973

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   aaactttcatatctaaacca 164
             ||||||||||||||||||||
Sbjct: 31136 aaactttcatatctaaacca 31117
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>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   tttccttcttcgccttctcc 299
             ||||||||||||||||||||
Sbjct: 98222 tttccttcttcgccttctcc 98203
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>gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complete sequence
          Length = 232568

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    atatagttctcttcttctaatggc 76
             |||| |||||||||||||||||||
Sbjct: 42584 atatggttctcttcttctaatggc 42607
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>gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, complete sequence
          Length = 194167

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    atatagttctcttcttctaatggc 76
             |||| |||||||||||||||||||
Sbjct: 78320 atatggttctcttcttctaatggc 78343
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>gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subunit mRNA, complete cds
          Length = 3599

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cctttccttcttcgccttct 297
           ||||||||||||||||||||
Sbjct: 350 cctttccttcttcgccttct 331
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>gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic subunit mRNA, complete
           cds
          Length = 3636

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cctttccttcttcgccttct 297
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,526,816
Number of Sequences: 3902068
Number of extensions: 3526816
Number of successful extensions: 63735
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63632
Number of HSP's gapped (non-prelim): 103
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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