ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl50e08 |
|---|---|
| Clone Library Name | barley_pub |
>MYC_ASTVU (Q17103) Myc protein (c-myc) (Fragment)| Length = 407 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 377 SSAPPPNQLSYQCQWSTALSPERRKSQRRGEIEGAD 270 SSAPP L C WS+ ++ ERRK + E + A+ Sbjct: 105 SSAPPIAALIQDCMWSSIIAEERRKLFMKSEKKHAE 140
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 374 SAPPPNQLSYQCQWSTALSPERRKSQRRG 288 S PP + +Y+ + TA +P R+K RRG Sbjct: 165 SPPPSTRPTYRRRRPTAATPSRKKKARRG 193
>RBP24_HUMAN (Q4ZG46) Ran-binding protein 2-like 4 (RanBP2L4)| Length = 1583 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = -3 Query: 350 SYQCQWSTALSPERRKSQRRGEIEGADRNRDLLSFMMKTLQLSV 219 SY+ + L ++ KS + E EGA + R+ L ++ L++ + Sbjct: 1221 SYKVRVHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKL 1264
>GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing protein 2 (Golgi| coiled coil protein GCC185) (CTCL tumor antigen se1-1) (CLL-associated antigen KW-11) (NY-REN-53 antigen) Length = 1583 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = -3 Query: 350 SYQCQWSTALSPERRKSQRRGEIEGADRNRDLLSFMMKTLQLSV 219 SY+ + L ++ KS + E EGA + R+ L ++ L++ + Sbjct: 1221 SYKVRVHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKL 1264
>AMYB_DROME (P81641) Alpha-amylase B precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 157 SSATASCPSYPGIELFSIDKGPGPACRFYRNSYDFNCNCE 38 S+A+ S SYPG+ S+D P A Y ++ + NCE Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAISNYNDANEVR-NCE 168
>AMYA_DROME (P08144) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 157 SSATASCPSYPGIELFSIDKGPGPACRFYRNSYDFNCNCE 38 S+A+ S SYPG+ S+D P A Y ++ + NCE Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAISNYNDANEVR-NCE 168
>WDR63_MACFA (Q95JP0) WD-repeat protein 63| Length = 891 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 138 HEAVAELHNEHQTCIRIMHWLENTKFIHR 224 H AV+ + N H+ I +HWL +T I+R Sbjct: 468 HCAVSSIENGHKRVITDIHWLSDTFEINR 496
>WDR63_HUMAN (Q8IWG1) WD-repeat protein 63 (Testis development protein NYD-SP29)| Length = 891 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 138 HEAVAELHNEHQTCIRIMHWLENTKFIHR 224 H AV+ + N H+ I +HWL +T I+R Sbjct: 468 HCAVSSIENGHKKVITDIHWLSDTFEINR 496
>AMYA_DROMA (P54215) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -1 Query: 157 SSATASCPSYPGIELFSIDKGPGPACRFYRNSYDFNCNCE 38 S+A+ S SYPG+ S+D P A Y ++ NCE Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAINNYNDANQVR-NCE 168
>AMY2_DROAN (O18345) Alpha-amylase 2 precursor (EC 3.2.1.1)| Length = 494 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -1 Query: 157 SSATASCPSYPGIELFSIDKGPGPACRFYRNSYDFNCNCE 38 S+A+ S SYPG+ S+D P A Y ++ NCE Sbjct: 130 STASPSSKSYPGVPFSSLDFNPTCAISNYNDANQVR-NCE 168
>AMY1_DROAN (Q23835) Alpha-amylase 1 precursor (EC 3.2.1.1)| Length = 494 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -1 Query: 157 SSATASCPSYPGIELFSIDKGPGPACRFYRNSYDFNCNCE 38 S+A+ S SYPG+ S+D P A Y ++ NCE Sbjct: 130 STASPSSKSYPGVPFSSLDFNPTCAISNYNDANQVR-NCE 168
>YQF3_CAEEL (Q09496) Putative serine/threonine-protein phosphatase C34C12.3 in| chromosome III (EC 3.1.3.16) Length = 331 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Frame = +2 Query: 98 FVYTKKLNP--WITWARSCSRAPQ 163 F+ ++K+ P WITWA C P+ Sbjct: 24 FIGSRKIEPEQWITWASECKYLPE 47
>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 Length = 819 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +2 Query: 110 KKLNPWITWARSCSRAP 160 K LN W+T+AR+C+ +P Sbjct: 73 KLLNNWLTYARTCNNSP 89
>ZN268_HUMAN (Q14587) Zinc finger protein 268 (Zinc finger protein HZF3)| Length = 947 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -1 Query: 238 KPYNCRCINLVFSSQCMILIH 176 KP+ C C FSS+ +L+H Sbjct: 274 KPFGCSCCEKAFSSKSYLLVH 294 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,317,644 Number of Sequences: 219361 Number of extensions: 997595 Number of successful extensions: 2294 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2294 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
