>gb|AY218846.1| Gossypium hirsutum arabinogalactan protein mRNA, complete cds
          Length = 1194

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 32   acaaaattcacaattacaattga 54
            |||||||||||||||||||||||
Sbjct: 1151 acaaaattcacaattacaattga 1129

>ref|XM_674158.1| Plasmodium berghei strain ANKA alanine--tRNA ligase (PB001101.00.0)
            partial mRNA
          Length = 3231

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 235  gttttcatcatgaatgataaaa 256
            ||||||||||||||||||||||
Sbjct: 3033 gttttcatcatgaatgataaaa 3012

>ref|XM_725953.1| Plasmodium yoelii yoelii str. 17XNL alanyl-tRNA synthetase (PY03081)
            partial mRNA
          Length = 3657

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  ttttcatcatgaatgataaaa 256
            |||||||||||||||||||||
Sbjct: 3458 ttttcatcatgaatgataaaa 3438

>emb|BX601647.4| Zebrafish DNA sequence from clone DKEY-19N10 in linkage group 9,
             complete sequence
          Length = 100697

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 95    acctttgtctatactaaaaagctcaatcc 123
             |||||| ||| ||||||||||||||||||
Sbjct: 38075 acctttttctttactaaaaagctcaatcc 38047

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 164      tgagcaccaaacatgtatcag 184
                |||||||||||||||||||||
Sbjct: 21710335 tgagcaccaaacatgtatcag 21710355

>gb|AY780645.1| Lactobacillus reuteri CRL1098 cobalamin gene cluster, partial sequence
          Length = 43444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 41    acaattacaattgaaatcatatgaatttc 69
             ||||||||||||||| |||||| ||||||
Sbjct: 15230 acaattacaattgaagtcatattaatttc 15202

>gb|AC084479.1|CBRG02D22 Caenorhabditis briggsae cosmid G02D22, complete sequence
          Length = 41896

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    aattacaattgaaatcatatg 63
             |||||||||||||||||||||
Sbjct: 34928 aattacaattgaaatcatatg 34948

>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0062E01
          Length = 161804

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 164    tgagcaccaaacatgtatcag 184
              |||||||||||||||||||||
Sbjct: 109266 tgagcaccaaacatgtatcag 109286

>emb|AL121652.2|CNS01DS2 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 1057B06 of
             library RPCI-11 from chromosome 2 of Homo sapiens (Human)
          Length = 187182

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   agagaataccaagtttataca 220
             |||||||||||||||||||||
Sbjct: 39600 agagaataccaagtttataca 39580

>ref|XM_641004.1| Dictyostelium discoideum hypothetical protein (DDB0190385), partial
            mRNA
          Length = 4161

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   aattacaattgaaatcatat 62
            ||||||||||||||||||||
Sbjct: 1281 aattacaattgaaatcatat 1300

>gb|AC120888.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0485F09,
              complete sequence
          Length = 161276

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    ttttcatcatgaatgataaa 255
              ||||||||||||||||||||
Sbjct: 152324 ttttcatcatgaatgataaa 152343

>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0682E05, complete sequence
          Length = 162223

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   ttttcatcatgaatgataaa 255
             ||||||||||||||||||||
Sbjct: 35480 ttttcatcatgaatgataaa 35499

>ref|XM_662115.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.10010)
           partial mRNA
          Length = 1314

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 ccaaacatgtatcaggatca 189
           ||||||||||||||||||||
Sbjct: 380 ccaaacatgtatcaggatca 399

>gb|AC142223.10| Medicago truncatula clone mth2-5e21, complete sequence
          Length = 122763

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    aaaattcacaattacaattgaaat 57
             |||||||| |||||||||||||||
Sbjct: 26371 aaaattcaaaattacaattgaaat 26348

>gb|AC119417.17| Medicago truncatula clone mth1-6m23, complete sequence
          Length = 110254

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    aaaattcacaattacaattgaaat 57
             |||||||| |||||||||||||||
Sbjct: 92770 aaaattcaaaattacaattgaaat 92793

>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
              complete sequence
          Length = 153643

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    ttttcatcatgaatgataaa 255
              ||||||||||||||||||||
Sbjct: 119997 ttttcatcatgaatgataaa 120016

>emb|AL603830.7| Mouse DNA sequence from clone RP23-467E19 on chromosome 11 Contains the
             Map2k3 gene for mitogen activated protein kinase kinase 3,
             the Gtlf3a gene for gene trap locus F3a, the Gtlf3b gene
             for gene trap locus F3b and two CpG islands, complete
             sequence
          Length = 104771

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   tctttgactctttcttcttt 313
             ||||||||||||||||||||
Sbjct: 73632 tctttgactctttcttcttt 73613

>gb|L34114.1|AIQCPMATK Astilbe japonica x Astilbe chinensis maturase (matK) gene, partial
           cds; chloroplast gene for chloroplast product
          Length = 1057

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 tttgactctttcttctttcc 315
           ||||||||||||||||||||
Sbjct: 366 tttgactctttcttctttcc 347

>emb|AL845317.7| Mouse DNA sequence from clone RP23-222K9 on chromosome 4 Contains a
             ribosomal protein L7 (Rpl7) pseudogene, the gene for a
             novel protein similar to stathmin 1 Stmn1 and a eukaryotic
             translation initiation factor 3 subunit 8 (Eif3s8)
             pseudogene, complete sequence
          Length = 181889

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   tttgactctttcttctttcc 315
             ||||||||||||||||||||
Sbjct: 58982 tttgactctttcttctttcc 58963

>gb|AC096627.28| Mus musculus strain C57BL/6J clone rp23-77b23 map 11, complete sequence
          Length = 264908

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    tctttgactctttcttcttt 313
              ||||||||||||||||||||
Sbjct: 105831 tctttgactctttcttcttt 105850

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 236      ttttcatcatgaatgataaa 255
                ||||||||||||||||||||
Sbjct: 32601263 ttttcatcatgaatgataaa 32601282

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      ttttcatcatgaatgataaa 255
                ||||||||||||||||||||
Sbjct: 16130735 ttttcatcatgaatgataaa 16130716

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 236      ttttcatcatgaatgataaa 255
                ||||||||||||||||||||
Sbjct: 25545433 ttttcatcatgaatgataaa 25545452

>emb|BX571976.11| Zebrafish DNA sequence from clone DKEY-174I19 in linkage group 18,
              complete sequence
          Length = 183462

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     ctttgtctatactaaaaagc 116
              ||||||||||||||||||||
Sbjct: 140517 ctttgtctatactaaaaagc 140498

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 236      ttttcatcatgaatgataaa 255
                ||||||||||||||||||||
Sbjct: 25864103 ttttcatcatgaatgataaa 25864122

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      ttttcatcatgaatgataaa 255
                ||||||||||||||||||||
Sbjct: 16083968 ttttcatcatgaatgataaa 16083949

>emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F04 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 165955

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    ttttcatcatgaatgataaa 255
              ||||||||||||||||||||
Sbjct: 112608 ttttcatcatgaatgataaa 112627

>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 237    tttcatcatgaatgataaaagatc 260
              ||||||||| ||||||||||||||
Sbjct: 418973 tttcatcattaatgataaaagatc 418996


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,622,605
Number of Sequences: 3902068
Number of extensions: 4622605
Number of successful extensions: 89011
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88875
Number of HSP's gapped (non-prelim): 136
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)