ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain ... 32 1.1
2OBP_VZVD (P09299) Replication origin binding protein (OBP) 31 1.9
3PTLCB_STAHJ (Q4L869) PTS system lactose-specific EIICB component... 30 3.2
4AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein 29 5.4
5PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor typ... 29 5.4

>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein)
            (WBRS9) (Williams syndrome transcription factor) (hWALP2)
          Length = 1483

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 199  LTATSTIKASQVKLPSSRRSLCRPGKKPHAQPCADTRSHHAASPPMLD 342
            L    TI+     +P + RS  RPGKKPH+     TR     +PP+ D
Sbjct: 1282 LRPRKTIRGKHSVIPPAARSGRRPGKKPHS-----TRRSQPKAPPVDD 1324



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>OBP_VZVD (P09299) Replication origin binding protein (OBP)|
          Length = 835

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 336 VRWMKLTHPGADANWQLPGPALYISPGT*NHSPV 437
           V W+K THPG     QL  P   I PG     PV
Sbjct: 29  VSWIKHTHPGISLELQLDVPVKLIKPGMSQTRPV 62



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>PTLCB_STAHJ (Q4L869) PTS system lactose-specific EIICB component (EIICB-Lac)|
           (EII-Lac) [Includes: Lactose permease IIC component (PTS
           system lactose-specific EIIC component);
           Lactose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.69) (PTS sys
          Length = 583

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = +2

Query: 152 NSVLNALILVYGGSTF*QLLAPSRPAKSNCQVPAGLYAGQGRNHMPSLVPTRALITPPRL 331
           N   N L+L  GG T   L      A    QVP    AG    HM  +   + +I  P++
Sbjct: 478 NEQTNVLVLCAGGGTSGLLANALNKAAEEYQVPVKAAAGGYGAHMDIMKDYQLIILAPQV 537

Query: 332 RC*MDEANTSWGRRQLAASRTRSV---HLTRNLKS 427
               ++      R  +  ++T+ V   +LTR+ K+
Sbjct: 538 ASNYEDIKQDTDRLGIKLAKTQGVEYINLTRDGKA 572



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>AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein|
          Length = 437

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 20/108 (18%)
 Frame = +1

Query: 157 CSKCSYISLRREYILTAT------------STIKASQVKLPSSRRSLCRPGKKPHAQPCA 300
           C++C    L  +Y+++              ST + S+  LPS+R     P    ++ P A
Sbjct: 46  CARCIERGLACQYMVSKRMGRNPRAPSPLDSTRRPSE-SLPSARSEQGLPAHNTYSTPHA 104

Query: 301 DTRSH-HAASPPMLDG*S*-------HILGPTPTGSFPDPLCTSHQEP 420
            T++H HA S P     S        H L PTP GS       SHQ P
Sbjct: 105 HTQAHTHAHSHPQPHPQSHPQSNQPPHAL-PTPNGSSSVSAIFSHQSP 151



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>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14) (Fragment)
          Length = 1499

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
 Frame = +1

Query: 205 ATSTIKASQVKLPSSRRSLCRPGKKPHA-QPCADTRSHHAASPPMLD----------G*S 351
           AT+T+ +  V+ P S     RPG  P   QPC         S P             G  
Sbjct: 704 ATTTVDS--VQAPISSHMALRPGPAPAPPQPCFPVPQPVPQSVPQPQPLPTPYTYSIGTK 761

Query: 352 *HILGPTPTGSFPDPLCTSHQEPEI 426
            H+ GP P   FP  + TS   P I
Sbjct: 762 QHLTGPLPQHHFPPGIPTSFPAPRI 786


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,498,404
Number of Sequences: 219361
Number of extensions: 1414987
Number of successful extensions: 2982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2981
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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