ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (... 39 0.006
2BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (... 39 0.008
3E2AK3_CAEEL (Q19192) Eukaryotic translation initiation factor 2-... 31 1.6
4CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1) 31 1.6
5DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5) 31 1.6
6CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1) 31 1.6
7Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22) 30 3.6
8GATA7_ARATH (Q9SKN6) Putative GATA transcription factor 7 28 8.1

>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -2

Query: 449 FGGDPCPNVMKRVAVEAVC 393
           FGGDPCP  MK++AVEA+C
Sbjct: 813 FGGDPCPGTMKKLAVEAIC 831



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>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = -2

Query: 449 FGGDPCPNVMKRVAVEAVCS 390
           FGGDPC NV+K+++VEA+CS
Sbjct: 816 FGGDPCRNVLKKLSVEAICS 835



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>E2AK3_CAEEL (Q19192) Eukaryotic translation initiation factor 2-alpha kinase|
           precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum
           kinase) (PERK) (PEK) (CePEK)
          Length = 1077

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -2

Query: 395 CSPGT*ATP--PTILI*RRHGLVRDRLSTREVIRR*SSTVKYYRVGVDVAGGFRRPFAIS 222
           C PG   TP  P ILI R    +R   + R + R   ST +   +GV +AGG   P  +S
Sbjct: 171 CGPGDTETPKNPIILIRRTTNSIRAMDTLRGIERWNLSTAE---IGVTLAGGITSPTLVS 227

Query: 221 SIVI 210
            + I
Sbjct: 228 DVKI 231



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>CTR2_ANOGA (Q17025) Chymotrypsin-2 precursor (EC 3.4.21.1)|
          Length = 258

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 88  AK*SSAPYSPLHSIPGPASTTSWSLLNNSWRYRAEH 195
           AK  SAPY     +PG       SLLNN W   A H
Sbjct: 39  AKNGSAPYQVSLQVPGWGHNCGGSLLNNRWVLTAAH 74



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>DNJ5_CAEEL (Q09446) DnaJ homolog dnj-5 (DnaJ domain protein 5)|
          Length = 915

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
 Frame = +1

Query: 106 PYSPLH---SIPGPASTT---SWSLLNNSW---RYRAEHQS*SEITMLEMANGLLNPPAT 258
           PYSP H    +P  A+TT   S SL +++W     + E  S   ++ L +A G  +P   
Sbjct: 70  PYSPRHESWGLPSNANTTLLGSSSLTSSNWFPFTDQKETSSNEILSSLNLAAGSSSPALP 129

Query: 259 STPTR 273
           STP+R
Sbjct: 130 STPSR 134



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>CTR1_ANOGA (Q27289) Chymotrypsin-1 precursor (EC 3.4.21.1)|
          Length = 259

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 88  AK*SSAPYSPLHSIPGPASTTSWSLLNNSWRYRAEH 195
           AK  SAPY     +PG       SLLNN W   A H
Sbjct: 39  AKNGSAPYQVSLQVPGWGHNCGGSLLNNRWVLTAAH 74



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>Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22)|
          Length = 220

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +2

Query: 14  FKRKDTTSSLLQER*HTAHAY----PQ-HQQNNLLHLTPPYTPFQDQPRLPAGRF*TIHG 178
           F RK+T S  +  R H    Y    PQ HQ    LHLT P  P+    R PA       G
Sbjct: 94  FHRKETES--IGGRAHRVPTYYNRPPQPHQPPGYLHLTSPAAPY----RPPAA-----SG 142

Query: 179 DTEQSTNPN 205
           D E ++NP+
Sbjct: 143 DEEDTSNPS 151



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>GATA7_ARATH (Q9SKN6) Putative GATA transcription factor 7|
          Length = 315

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 99  FCTLLPPTLHSRTSLDYQLVAFEQFMEIQSRAPILI 206
           F  L+PP L    SL Y+     Q +++Q   PIL+
Sbjct: 48  FQKLVPPPLDELMSLSYEFTCNGQRVQVQKHVPILL 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,889,394
Number of Sequences: 219361
Number of extensions: 1518166
Number of successful extensions: 3475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3475
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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