>gb|AY112097.1| Zea mays CL313_-3 mRNA sequence
          Length = 603

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                       
Query: 388 ggagagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctccgccg 447
           |||||||| |||||||||||||||||||||||  ||||  |||||||||||||||| |||
Sbjct: 259 ggagagcacaccgcctcgaccgccaccctcttggtcacgctcgggcaggggtctccaccg 200

              
Query: 448 aag 450
           |||
Sbjct: 199 aag 197



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                     
Query: 149 ccagctggtcgcttttgaacaattcatggagatacagagcagagcaccaatcctaatc 206
           |||||||| |||||| ||||| ||||||||||  |  |||||||||||||||||||||
Sbjct: 442 ccagctggccgcttt-gaacagttcatggaga--cgtagcagagcaccaatcctaatc 388

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                     
Query: 390     agagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctcc 443
               ||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 3507266 agagcataccgcctcaaccgccacccttttcatcacctccgggcagggatctcc 3507319

>gb|AF508799.1| Oryza sativa (japonica cultivar-group) beta-galactosidase mRNA,
            complete cds
          Length = 2925

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 390  agagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctcc 443
            ||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 2555 agagcataccgcctcaaccgccacccttttcatcacctccgggcagggatctcc 2502

>gb|AF499737.1| Oryza sativa (japonica cultivar-group) beta-galactosidase mRNA,
            complete cds
          Length = 2919

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 390  agagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctcc 443
            ||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 2549 agagcataccgcctcaaccgccacccttttcatcacctccgggcagggatctcc 2496

>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12,
            complete sequence
          Length = 103330

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 390  agagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctcc 443
            ||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 3109 agagcataccgcctcaaccgccacccttttcatcacctccgggcagggatctcc 3056

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                     
Query: 390     agagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctcc 443
               ||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 3507377 agagcataccgcctcaaccgccacccttttcatcacctccgggcagggatctcc 3507430

>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0026H19, complete sequence
          Length = 150620

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                   
Query: 390   agagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctcc 443
             ||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 24919 agagcataccgcctcaaccgccacccttttcatcacctccgggcagggatctcc 24972

>dbj|AK102192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087B02, full
            insert sequence
          Length = 3309

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 390  agagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctcc 443
            ||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 2834 agagcataccgcctcaaccgccacccttttcatcacctccgggcagggatctcc 2781

>dbj|AK060645.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G03, full
            insert sequence
          Length = 1600

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 390  agagcataccgcctcgaccgccaccctcttcatcacattcgggcaggggtctcc 443
            ||||||||||||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 1138 agagcataccgcctcaaccgccacccttttcatcacctccgggcagggatctcc 1085

>gb|BC073483.1| Xenopus laevis cDNA clone IMAGE:5570009, partial cds
          Length = 5458

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 95   aatcttctgcaccttactccc 115
            |||||||||||||||||||||
Sbjct: 5287 aatcttctgcaccttactccc 5307

>emb|Z66512.1|CEF52H3 Caenorhabditis elegans Cosmid F52H3, complete sequence
          Length = 42632

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    aaggatacaacatcttctctt 43
             |||||||||||||||||||||
Sbjct: 37619 aaggatacaacatcttctctt 37639

>gb|AC152977.1| Mus musculus 10 BAC RP23-251I19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 192515

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   aaatcacaatgctagaaatgg 229
             |||||||||||||||||||||
Sbjct: 21906 aaatcacaatgctagaaatgg 21886

>gb|AY109431.1| Zea mays CL313_1 mRNA sequence
          Length = 2617

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/52 (86%), Gaps = 2/52 (3%)
 Strand = Plus / Minus

                                                               
Query: 162 tttgaacaattcatggagatacagagcagagcaccaatcctaatctgaaatc 213
           |||||||||||||||||||| |  ||||||  || |||||||||||| ||||
Sbjct: 855 tttgaacaattcatggagatgc--agcagactacaaatcctaatctggaatc 806

>ref|NM_111012.2| Arabidopsis thaliana MBD9; DNA binding AT3G01460 (MBD9) mRNA,
           complete cds
          Length = 7457

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  ttctcttcttcaagaaagat 56
           ||||||||||||||||||||
Sbjct: 978 ttctcttcttcaagaaagat 997

>ref|XM_526121.1| PREDICTED: Pan troglodytes similar to SETMAR protein (LOC470738),
           mRNA
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 cacaaggccgtgtcgtcttt 352
           ||||||||||||||||||||
Sbjct: 37  cacaaggccgtgtcgtcttt 18

>gb|AC119980.7| Mus musculus chromosome 8, clone RP24-495J19, complete sequence
          Length = 145150

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   gaaatcacaatgctagaaat 227
             ||||||||||||||||||||
Sbjct: 38616 gaaatcacaatgctagaaat 38597

>gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, complete sequence
          Length = 197827

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aacatcttctcttcttcaag 50
             ||||||||||||||||||||
Sbjct: 73997 aacatcttctcttcttcaag 74016

>gb|AC132104.3| Mus musculus BAC clone RP24-364N7 from chromosome 9, complete sequence
          Length = 161545

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    ctcccccctacactccattc 130
              ||||||||||||||||||||
Sbjct: 111178 ctcccccctacactccattc 111159

>gb|BC011635.2| Homo sapiens SET domain and mariner transposase fusion gene, mRNA
           (cDNA clone MGC:12780 IMAGE:4080032), complete cds
          Length = 1701

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 cacaaggccgtgtcgtcttt 352
           ||||||||||||||||||||
Sbjct: 30  cacaaggccgtgtcgtcttt 11

>gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC T13O15 genomic sequence,
             complete sequence
          Length = 86324

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ttctcttcttcaagaaagat 56
             ||||||||||||||||||||
Sbjct: 77558 ttctcttcttcaagaaagat 77577

>gb|AC023483.5| Homo sapiens chromosome 3 clone RP11-453A3 map 3p, complete sequence
          Length = 171051

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    cacaaggccgtgtcgtcttt 352
              ||||||||||||||||||||
Sbjct: 161166 cacaaggccgtgtcgtcttt 161147

>gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p, complete sequence
          Length = 172221

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   cacaaggccgtgtcgtcttt 352
             ||||||||||||||||||||
Sbjct: 96955 cacaaggccgtgtcgtcttt 96936

>gb|BC008931.2| Homo sapiens SET domain and mariner transposase fusion gene, mRNA
           (cDNA clone IMAGE:2819917), partial cds
          Length = 1329

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 cacaaggccgtgtcgtcttt 352
           ||||||||||||||||||||
Sbjct: 23  cacaaggccgtgtcgtcttt 4

>ref|NM_006515.1| Homo sapiens SET domain and mariner transposase fusion gene
           (SETMAR), mRNA
          Length = 2063

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 cacaaggccgtgtcgtcttt 352
           ||||||||||||||||||||
Sbjct: 21  cacaaggccgtgtcgtcttt 2

>emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chromosome 13 Contains a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene and a novel pseudogene (KIAA1935 FLJ31359),
              complete sequence
          Length = 154273

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    tcatggagatacagagcaga 191
              ||||||||||||||||||||
Sbjct: 109956 tcatggagatacagagcaga 109937

>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8
          Length = 87224

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   aatcctaatctgaaatcacaatgc 220
             ||||||||||| ||||||||||||
Sbjct: 29377 aatcctaatctaaaatcacaatgc 29354

>emb|BX005370.13| Zebrafish DNA sequence from clone DKEY-21P9 in linkage group 10, complete
              sequence
          Length = 208765

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    tggagatacagagcagagca 194
              ||||||||||||||||||||
Sbjct: 188996 tggagatacagagcagagca 189015

>emb|CR600492.1| full-length cDNA clone CS0DF011YL04 of Fetal brain of Homo sapiens
           (human)
          Length = 1651

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 cacaaggccgtgtcgtcttt 352
           ||||||||||||||||||||
Sbjct: 34  cacaaggccgtgtcgtcttt 15

>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence
          Length = 68440

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tcatggagatacagagcaga 191
             ||||||||||||||||||||
Sbjct: 46198 tcatggagatacagagcaga 46217

>gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, complete sequence
          Length = 189207

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   gtagtactttacagttgaac 292
             ||||||||||||||||||||
Sbjct: 32416 gtagtactttacagttgaac 32397

>dbj|AK222734.1| Homo sapiens mRNA for SET domain and mariner transposase fusion
           gene variant, clone: DMC03654
          Length = 2093

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 cacaaggccgtgtcgtcttt 352
           ||||||||||||||||||||
Sbjct: 40  cacaaggccgtgtcgtcttt 21

>gb|AF212832.5| Homo sapiens chromosome 8 clone CTC-806C5 map 8q24.3, complete sequence
          Length = 122029

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    gtagtactttacagttgaac 292
              ||||||||||||||||||||
Sbjct: 102536 gtagtactttacagttgaac 102555

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     aaaataatcttctgcacctt 109
              ||||||||||||||||||||
Sbjct: 838347 aaaataatcttctgcacctt 838366

>gb|U80776.1|HSU80776 Human EST clone NIB1543 mariner transposon Hsmar1 orf gene,
           complete cds
          Length = 2063

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 cacaaggccgtgtcgtcttt 352
           ||||||||||||||||||||
Sbjct: 21  cacaaggccgtgtcgtcttt 2

>gb|AF054989.1|AF054989 Homo sapiens clone 23658 unknown mRNA, complete cds
          Length = 2087

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 cacaaggccgtgtcgtcttt 352
           ||||||||||||||||||||
Sbjct: 30  cacaaggccgtgtcgtcttt 11


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,015,164
Number of Sequences: 3902068
Number of extensions: 4015164
Number of successful extensions: 100558
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100409
Number of HSP's gapped (non-prelim): 149
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)