Clone Name | rbastl50d07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3121 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 304 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2770 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2716
>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA Length = 3169 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 304 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2723
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 304 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2570749 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2570695
>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_C03 Length = 103297 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 304 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 49532 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 49478
>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full insert sequence Length = 3120 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 304 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2769 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2715
>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full insert sequence Length = 3169 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 304 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2723
>gb|AY104160.1| Zea mays PCO080306 mRNA sequence Length = 1460 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 308 tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 355 ||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct: 1044 tcactcctcgtggtactctgggttcttcttcagaatcacaaagccctc 997
>gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence Length = 1023 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 308 tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 355 |||||| || ||||| |||||||||||||||| ||| ||||||||||| Sbjct: 595 tcactcttcatggtactccgggttcttcttcaaaatcacaaagccctc 548
>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence Length = 208850 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tacacacttgatacatataca 30 ||||||||||||||||||||| Sbjct: 48749 tacacacttgatacatataca 48729
>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24, complete sequence Length = 143425 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 cacacttgatacatatacaaa 32 ||||||||||||||||||||| Sbjct: 114349 cacacttgatacatatacaaa 114369 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 cacacttgatacatatacaaa 32 ||||||||||||||||||||| Sbjct: 104510 cacacttgatacatatacaaa 104530
>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete sequence Length = 181415 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 cacacttgatacatatacaaa 32 ||||||||||||||||||||| Sbjct: 154850 cacacttgatacatatacaaa 154830
>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130006D24 product:unclassifiable, full insert sequence Length = 3651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 tacacacttgatacatataca 30 ||||||||||||||||||||| Sbjct: 2970 tacacacttgatacatataca 2990
>ref|NM_020816.1| Homo sapiens kinesin family member 17 (KIF17), mRNA Length = 3968 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 agccctccaacgtggaggtc 368 |||||||||||||||||||| Sbjct: 1983 agccctccaacgtggaggtc 2002
>ref|XM_513170.1| PREDICTED: Pan troglodytes kinesin family member 17 (LOC456592), mRNA Length = 2922 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 agccctccaacgtggaggtc 368 |||||||||||||||||||| Sbjct: 560 agccctccaacgtggaggtc 579
>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205032 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 acacacttgatacatataca 30 |||||||||||||||||||| Sbjct: 184660 acacacttgatacatataca 184679
>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence Length = 179807 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 acacacttgatacatataca 30 |||||||||||||||||||| Sbjct: 23843 acacacttgatacatataca 23862
>gb|AY484427.1| Homo sapiens kinesin isoform KIF17B (KIF17B) mRNA, complete cds Length = 3968 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 agccctccaacgtggaggtc 368 |||||||||||||||||||| Sbjct: 1983 agccctccaacgtggaggtc 2002
>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0) partial mRNA Length = 287 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acatatacaaataagcttaa 41 |||||||||||||||||||| Sbjct: 213 acatatacaaataagcttaa 232
>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0) partial mRNA Length = 984 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cacttgatacatatacaaat 33 |||||||||||||||||||| Sbjct: 599 cacttgatacatatacaaat 618
>emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chromosome 1 Contains the 5' end of the KIF17 gene for kinesin family member 17, three novel genes, the 3' end of gene HP1-BP74 and two CpG islands, complete sequence Length = 85781 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 agccctccaacgtggaggtc 368 |||||||||||||||||||| Sbjct: 16384 agccctccaacgtggaggtc 16365
>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3 Length = 315079 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 aaaaatgtttttggataaac 181 |||||||||||||||||||| Sbjct: 19655 aaaaatgtttttggataaac 19674
>gb|BC065927.1| Homo sapiens kinesin family member 17, mRNA (cDNA clone MGC:70843 IMAGE:6171598), complete cds Length = 3750 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 agccctccaacgtggaggtc 368 |||||||||||||||||||| Sbjct: 1747 agccctccaacgtggaggtc 1766
>emb|BX548046.4| Zebrafish DNA sequence from clone DKEY-176G1 in linkage group 17, complete sequence Length = 168695 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 aataaaaatgtttttggata 178 |||||||||||||||||||| Sbjct: 5867 aataaaaatgtttttggata 5886
>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1, complete sequence Length = 121187 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 ctccaaaaacttgcatcaga 286 |||||||||||||||||||| Sbjct: 30564 ctccaaaaacttgcatcaga 30545
>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence Length = 162949 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 atgccgaggtgtaagagcat 210 |||||||||||||||||||| Sbjct: 107859 atgccgaggtgtaagagcat 107878
>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence Length = 151297 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tccctcactcctcgtggtat 323 |||||||||||||||||||| Sbjct: 66748 tccctcactcctcgtggtat 66729
>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence Length = 184579 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 atgccgaggtgtaagagcat 210 |||||||||||||||||||| Sbjct: 65374 atgccgaggtgtaagagcat 65393
>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1, complete sequence Length = 130339 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 ctccaaaaacttgcatcaga 286 |||||||||||||||||||| Sbjct: 100541 ctccaaaaacttgcatcaga 100560
>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5, complete sequence Length = 209796 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tacacacttgatacatatac 29 |||||||||||||||||||| Sbjct: 49955 tacacacttgatacatatac 49936
>dbj|AB037826.2| Homo sapiens mRNA for KIAA1405 protein, partial cds Length = 3570 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 agccctccaacgtggaggtc 368 |||||||||||||||||||| Sbjct: 1585 agccctccaacgtggaggtc 1604
>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete sequence Length = 221374 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 acacacttgatacatataca 30 |||||||||||||||||||| Sbjct: 64556 acacacttgatacatataca 64575
>emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chromosome 1, complete sequence Length = 150434 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 agccctccaacgtggaggtc 368 |||||||||||||||||||| Sbjct: 39457 agccctccaacgtggaggtc 39438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,820,981 Number of Sequences: 3902068 Number of extensions: 3820981 Number of successful extensions: 70472 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70379 Number of HSP's gapped (non-prelim): 93 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)