ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
2ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group... 94 4e-16
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
4dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
5dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
6dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
7gb|AY104160.1| Zea mays PCO080306 mRNA sequence 72 2e-09
8gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence 56 9e-05
9gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, com... 42 1.4
10emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 42 1.4
11emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in ... 42 1.4
12dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 1.4
13ref|NM_020816.1| Homo sapiens kinesin family member 17 (KIF17), ... 40 5.5
14ref|XM_513170.1| PREDICTED: Pan troglodytes kinesin family membe... 40 5.5
15gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cance... 40 5.5
16gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, com... 40 5.5
17gb|AY484427.1| Homo sapiens kinesin isoform KIF17B (KIF17B) mRNA... 40 5.5
18ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.5
19ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.5
20emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chro... 40 5.5
21emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) com... 40 5.5
22gb|BC065927.1| Homo sapiens kinesin family member 17, mRNA (cDNA... 40 5.5
23emb|BX548046.4| Zebrafish DNA sequence from clone DKEY-176G1 in ... 40 5.5
24emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 i... 40 5.5
25gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p... 40 5.5
26gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complet... 40 5.5
27gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3... 40 5.5
28emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in... 40 5.5
29emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 i... 40 5.5
30dbj|AB037826.2| Homo sapiens mRNA for KIAA1405 protein, partial cds 40 5.5
31emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 5.5
32emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chr... 40 5.5

>ref|XM_464147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3121

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                   
Query: 304  tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358
            |||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2770 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2716



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>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA
          Length = 3169

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                   
Query: 304  tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358
            |||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2723



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                      
Query: 304     tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358
               |||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2570749 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2570695



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>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                    
Query: 304   tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358
             |||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 49532 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 49478



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>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full
            insert sequence
          Length = 3120

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                   
Query: 304  tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358
            |||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2769 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2715



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>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full
            insert sequence
          Length = 3169

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 53/55 (96%)
 Strand = Plus / Minus

                                                                   
Query: 304  tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 358
            |||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2723



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>gb|AY104160.1| Zea mays PCO080306 mRNA sequence
          Length = 1460

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 308  tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 355
            ||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 1044 tcactcctcgtggtactctgggttcttcttcagaatcacaaagccctc 997



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>gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence
          Length = 1023

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 308 tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 355
           |||||| || ||||| |||||||||||||||| ||| |||||||||||
Sbjct: 595 tcactcttcatggtactccgggttcttcttcaaaatcacaaagccctc 548



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>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    tacacacttgatacatataca 30
             |||||||||||||||||||||
Sbjct: 48749 tacacacttgatacatataca 48729



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>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
              complete sequence
          Length = 143425

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     cacacttgatacatatacaaa 32
              |||||||||||||||||||||
Sbjct: 114349 cacacttgatacatatacaaa 114369



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     cacacttgatacatatacaaa 32
              |||||||||||||||||||||
Sbjct: 104510 cacacttgatacatatacaaa 104530



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>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete
              sequence
          Length = 181415

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 12     cacacttgatacatatacaaa 32
              |||||||||||||||||||||
Sbjct: 154850 cacacttgatacatatacaaa 154830



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>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130006D24 product:unclassifiable, full
            insert sequence
          Length = 3651

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   tacacacttgatacatataca 30
            |||||||||||||||||||||
Sbjct: 2970 tacacacttgatacatataca 2990



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>ref|NM_020816.1| Homo sapiens kinesin family member 17 (KIF17), mRNA
          Length = 3968

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  agccctccaacgtggaggtc 368
            ||||||||||||||||||||
Sbjct: 1983 agccctccaacgtggaggtc 2002



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>ref|XM_513170.1| PREDICTED: Pan troglodytes kinesin family member 17 (LOC456592),
           mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 349 agccctccaacgtggaggtc 368
           ||||||||||||||||||||
Sbjct: 560 agccctccaacgtggaggtc 579



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>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205032

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     acacacttgatacatataca 30
              ||||||||||||||||||||
Sbjct: 184660 acacacttgatacatataca 184679



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>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence
          Length = 179807

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    acacacttgatacatataca 30
             ||||||||||||||||||||
Sbjct: 23843 acacacttgatacatataca 23862



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>gb|AY484427.1| Homo sapiens kinesin isoform KIF17B (KIF17B) mRNA, complete cds
          Length = 3968

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  agccctccaacgtggaggtc 368
            ||||||||||||||||||||
Sbjct: 1983 agccctccaacgtggaggtc 2002



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>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0)
           partial mRNA
          Length = 287

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  acatatacaaataagcttaa 41
           ||||||||||||||||||||
Sbjct: 213 acatatacaaataagcttaa 232



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>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0)
           partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  cacttgatacatatacaaat 33
           ||||||||||||||||||||
Sbjct: 599 cacttgatacatatacaaat 618



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>emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chromosome 1 Contains the 5'
             end of the KIF17 gene for kinesin family member 17, three
             novel genes, the 3' end of gene HP1-BP74 and two CpG
             islands, complete sequence
          Length = 85781

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   agccctccaacgtggaggtc 368
             ||||||||||||||||||||
Sbjct: 16384 agccctccaacgtggaggtc 16365



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>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3
          Length = 315079

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   aaaaatgtttttggataaac 181
             ||||||||||||||||||||
Sbjct: 19655 aaaaatgtttttggataaac 19674



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>gb|BC065927.1| Homo sapiens kinesin family member 17, mRNA (cDNA clone MGC:70843
            IMAGE:6171598), complete cds
          Length = 3750

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  agccctccaacgtggaggtc 368
            ||||||||||||||||||||
Sbjct: 1747 agccctccaacgtggaggtc 1766



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>emb|BX548046.4| Zebrafish DNA sequence from clone DKEY-176G1 in linkage group 17,
            complete sequence
          Length = 168695

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  aataaaaatgtttttggata 178
            ||||||||||||||||||||
Sbjct: 5867 aataaaaatgtttttggata 5886



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>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1,
             complete sequence
          Length = 121187

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   ctccaaaaacttgcatcaga 286
             ||||||||||||||||||||
Sbjct: 30564 ctccaaaaacttgcatcaga 30545



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>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    atgccgaggtgtaagagcat 210
              ||||||||||||||||||||
Sbjct: 107859 atgccgaggtgtaagagcat 107878



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>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence
          Length = 151297

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   tccctcactcctcgtggtat 323
             ||||||||||||||||||||
Sbjct: 66748 tccctcactcctcgtggtat 66729



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>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence
          Length = 184579

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   atgccgaggtgtaagagcat 210
             ||||||||||||||||||||
Sbjct: 65374 atgccgaggtgtaagagcat 65393



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>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1,
              complete sequence
          Length = 130339

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    ctccaaaaacttgcatcaga 286
              ||||||||||||||||||||
Sbjct: 100541 ctccaaaaacttgcatcaga 100560



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>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    tacacacttgatacatatac 29
             ||||||||||||||||||||
Sbjct: 49955 tacacacttgatacatatac 49936



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>dbj|AB037826.2| Homo sapiens mRNA for KIAA1405 protein, partial cds
          Length = 3570

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  agccctccaacgtggaggtc 368
            ||||||||||||||||||||
Sbjct: 1585 agccctccaacgtggaggtc 1604



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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
             sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    acacacttgatacatataca 30
             ||||||||||||||||||||
Sbjct: 64556 acacacttgatacatataca 64575



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>emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chromosome 1, complete
             sequence
          Length = 150434

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   agccctccaacgtggaggtc 368
             ||||||||||||||||||||
Sbjct: 39457 agccctccaacgtggaggtc 39438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,820,981
Number of Sequences: 3902068
Number of extensions: 3820981
Number of successful extensions: 70472
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70379
Number of HSP's gapped (non-prelim): 93
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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