ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl50d05 |
|---|---|
| Clone Library Name | barley_pub |
>TOP1_ARATH (P30181) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 916 Score = 74.7 bits (182), Expect = 8e-14 Identities = 31/39 (79%), Positives = 36/39 (92%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDVEPDFRF 309 PRITVAWCK HEVPIEKIF+K++L KF WAMDVEP++RF Sbjct: 875 PRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDVEPEYRF 913
>TOP1_DAUCA (P93119) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 790 Score = 68.2 bits (165), Expect = 8e-12 Identities = 30/39 (76%), Positives = 34/39 (87%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDVEPDFRF 309 PRITVAWCK H+VPIEKIF+K++LAKF WAMDV FRF Sbjct: 752 PRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVVLIFRF 790
>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 972 Score = 53.5 bits (127), Expect = 2e-07 Identities = 24/40 (60%), Positives = 32/40 (80%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 309 PRI+VAWCK H+VPIEKIF+KT KF WA+ + + ++RF Sbjct: 933 PRISVAWCKKHDVPIEKIFNKTQRTKFLWAVHMADENYRF 972
>TOP1_RAT (Q9WUL0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 52.4 bits (124), Expect = 4e-07 Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 309 PRITVAWCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 728 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_MOUSE (Q04750) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 52.4 bits (124), Expect = 4e-07 Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 309 PRITVAWCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 728 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_CRIGR (Q07050) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 52.4 bits (124), Expect = 4e-07 Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 309 PRITVAWCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 728 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>TOP1_CERAE (Q7YR26) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 767 Score = 52.4 bits (124), Expect = 4e-07 Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 309 PRITVAWCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 728 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 767
>TOP1_HUMAN (P11387) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 765 Score = 52.4 bits (124), Expect = 4e-07 Identities = 24/40 (60%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDV-EPDFRF 309 PRITVAWCK VPIEKI++KT KF WA+D+ + D+ F Sbjct: 726 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 765
>TOP1_SCHPO (P07799) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 814 Score = 50.4 bits (119), Expect = 2e-06 Identities = 21/39 (53%), Positives = 29/39 (74%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDVEPDFRF 309 PR+T ++ K +VPIEK+FSKTI KF WA D PD+++ Sbjct: 776 PRLTYSFSKREDVPIEKLFSKTIRDKFNWAADTPPDWKW 814
>TOP1_YEAST (P04786) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Maintenance of killer protein 1) Length = 769 Score = 48.9 bits (115), Expect = 5e-06 Identities = 21/40 (52%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMD-VEPDFRF 309 PR++V +CK ++VPIEKIF+KT+ KF WA++ V+ ++RF Sbjct: 730 PRLSVVFCKKYDVPIEKIFTKTLREKFKWAIESVDENWRF 769
>TOP1M_HUMAN (Q969P6) DNA topoisomerase I, mitochondrial precursor (EC 5.99.1.2)| (TOP1mt) Length = 601 Score = 48.5 bits (114), Expect = 6e-06 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMDVE-PDFRF 309 PRI++AWCK VP+EKI+SKT +F WA+ + DF F Sbjct: 562 PRISIAWCKRFRVPVEKIYSKTQRERFAWALAMAGEDFEF 601
>TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 829 Score = 40.0 bits (92), Expect = 0.002 Identities = 16/22 (72%), Positives = 20/22 (90%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKT 360 PRI+VAWCK + VPIEKI++KT Sbjct: 782 PRISVAWCKKYGVPIEKIYNKT 803
>TOP1_CANAL (Q00313) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 778 Score = 39.7 bits (91), Expect = 0.003 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Frame = -1 Query: 425 PRITVAWCKTHEVPIEKIFSKTILAKFGWAMD-VEPDFRF 309 PR+ V + K +VPIEK+F+KT+ KF WA++ + ++RF Sbjct: 739 PRLIVMFSKKFDVPIEKLFTKTLREKFIWAIESADENWRF 778
>TAF7_YEAST (Q05021) Transcription initiation factor TFIID subunit 7| (TBP-associated factor 7) (TBP-associated factor 67 kDa) (TAFII-67) Length = 590 Score = 34.7 bits (78), Expect = 0.096 Identities = 33/121 (27%), Positives = 57/121 (47%) Frame = +3 Query: 63 RPKCKHEFRQSDHSKYGREDG*KKSLQRECRVLPSSRSRETSKNKHRALPLLLVAVRCPG 242 +PK K ++ S G+E K SL+ + + ++ E K H+A L L +R PG Sbjct: 42 KPKLKINLKKKKESADGKEK--KNSLKLKLNL---KKNEEPVKKIHKAPKLRLKPIRIPG 96 Query: 243 EGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLCKNRLAENLLNRDFMGFAPCYRNS 422 E ++E++ LI++ ++L I DI + KN L D+ G + ++N Sbjct: 97 EAYDSEASDIEDDPLIESGVIL--RILPDIQL--EFVKNSLESG----DYSGISIKWKNE 148 Query: 423 R 425 R Sbjct: 149 R 149
>PP1G_XENLA (P36874) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) Length = 323 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_RAT (P63088) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_MOUSE (P63087) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_HUMAN (P36873) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_CANFA (Q8MJ46) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>PP1G_BOVIN (P61287) Serine/threonine-protein phosphatase PP1-gamma catalytic| subunit (EC 3.1.3.16) (PP-1G) (Protein phosphatase 1C catalytic subunit) Length = 323 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 213 LLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLC 353 LL V PG+ ++ + N RG L I L I L++ P K+C Sbjct: 16 LLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 62
>DNLJ_THEFI (Q9ZHI0) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) (Tfi DNA ligase) Length = 670 Score = 28.9 bits (63), Expect = 5.3 Identities = 20/72 (27%), Positives = 31/72 (43%) Frame = +3 Query: 177 RETSKNKHRALPLLLVAVRCPGEGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLCK 356 R+ ++KHR L LL A+ PG G NL R + + E L++ +L Sbjct: 496 RQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELLEVEEVGELTA 555 Query: 357 NRLAENLLNRDF 392 + E L + F Sbjct: 556 RAILETLKDPAF 567
>CASP2_HUMAN (P42575) Caspase-2 precursor (EC 3.4.22.-) (CASP-2) (ICH-1| protease) (ICH-1L/1S) [Contains: Caspase-2 subunit p18; Caspase-2 subunit p13; Caspase-2 subunit p12] Length = 452 Score = 28.5 bits (62), Expect = 6.9 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +3 Query: 243 EGLEAESNLPRGHWLIQNPILLESEIRLDIHCPSKLCKNRLAENLLNRDFMGFAP 407 +G A N RG W I+ + SE D+H L K N L +D G+AP Sbjct: 372 KGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVK----VNALIKDREGYAP 422 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,402,745 Number of Sequences: 219361 Number of extensions: 1368542 Number of successful extensions: 3182 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3180 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
