Clone Name | rbastl50d05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1066_B03.125 mRNA Length = 3327 Score = 103 bits (52), Expect = 5e-19 Identities = 76/80 (95%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 136 gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 194 |||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct: 3171 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3114 Query: 195 aaacaccgagctcttccttt 214 |||||||||||||||||||| Sbjct: 3113 aaacaccgagctcttccttt 3094 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 1 atatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaattt 60 ||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 3302 atatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaattc 3243 Query: 61 gtcggcccaaatgca 75 || ||||||||||| Sbjct: 3242 ctcagcccaaatgca 3228 Score = 63.9 bits (32), Expect = 4e-07 Identities = 98/120 (81%) Strand = Plus / Minus Query: 303 ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 362 |||||| |||||||||||||| ||||| ||||||||||| ||| || |||| | | Sbjct: 3003 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2944 Query: 363 cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 422 ||| ||||||||||||| || || ||||||||| |||||||||||| || |||||||| Sbjct: 2943 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2884
>ref|XM_480154.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3327 Score = 103 bits (52), Expect = 5e-19 Identities = 76/80 (95%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 136 gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 194 |||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct: 3171 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3114 Query: 195 aaacaccgagctcttccttt 214 |||||||||||||||||||| Sbjct: 3113 aaacaccgagctcttccttt 3094 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 1 atatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaattt 60 ||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 3302 atatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaattc 3243 Query: 61 gtcggcccaaatgca 75 || ||||||||||| Sbjct: 3242 ctcagcccaaatgca 3228 Score = 63.9 bits (32), Expect = 4e-07 Identities = 98/120 (81%) Strand = Plus / Minus Query: 303 ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 362 |||||| |||||||||||||| ||||| ||||||||||| ||| || |||| | | Sbjct: 3003 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2944 Query: 363 cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 422 ||| ||||||||||||| || || ||||||||| |||||||||||| || |||||||| Sbjct: 2943 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2884
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 103 bits (52), Expect = 5e-19 Identities = 76/80 (95%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 136 gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 194 |||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct: 3136305 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3136248 Query: 195 aaacaccgagctcttccttt 214 |||||||||||||||||||| Sbjct: 3136247 aaacaccgagctcttccttt 3136228 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 1 atatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaattt 60 ||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 3136436 atatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaattc 3136377 Query: 61 gtcggcccaaatgca 75 || ||||||||||| Sbjct: 3136376 ctcagcccaaatgca 3136362 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 303 ctcttagaatctgaaatccggctcgacatccattgccca 341 |||||| |||||||||||||| ||||| ||||||||||| Sbjct: 3136137 ctcttaaaatctgaaatccgggtcgacgtccattgccca 3136099 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Minus Query: 375 cttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 422 |||||| || || ||||||||| |||||||||||| || |||||||| Sbjct: 3135762 cttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 3135715
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1066_B03 Length = 115339 Score = 103 bits (52), Expect = 5e-19 Identities = 76/80 (95%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 136 gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 194 |||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct: 95789 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 95732 Query: 195 aaacaccgagctcttccttt 214 |||||||||||||||||||| Sbjct: 95731 aaacaccgagctcttccttt 95712 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 1 atatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaattt 60 ||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 95920 atatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaattc 95861 Query: 61 gtcggcccaaatgca 75 || ||||||||||| Sbjct: 95860 ctcagcccaaatgca 95846 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 303 ctcttagaatctgaaatccggctcgacatccattgccca 341 |||||| |||||||||||||| ||||| ||||||||||| Sbjct: 95621 ctcttaaaatctgaaatccgggtcgacgtccattgccca 95583 Score = 40.1 bits (20), Expect = 5.7 Identities = 41/48 (85%) Strand = Plus / Minus Query: 375 cttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 422 |||||| || || ||||||||| |||||||||||| || |||||||| Sbjct: 95246 cttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 95199
>dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050E19, full insert sequence Length = 3326 Score = 103 bits (52), Expect = 5e-19 Identities = 76/80 (95%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 136 gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagacttcaaaaaac 194 |||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct: 3170 gcctacaatgagaatgccgggtgcttccttctttccaggagcaggg-gacttc-aaaaac 3113 Query: 195 aaacaccgagctcttccttt 214 |||||||||||||||||||| Sbjct: 3112 aaacaccgagctcttccttt 3093 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 1 atatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaattt 60 ||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 3301 atatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaattc 3242 Query: 61 gtcggcccaaatgca 75 || ||||||||||| Sbjct: 3241 ctcagcccaaatgca 3227 Score = 63.9 bits (32), Expect = 4e-07 Identities = 98/120 (81%) Strand = Plus / Minus Query: 303 ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 362 |||||| |||||||||||||| ||||| ||||||||||| ||| || |||| | | Sbjct: 3002 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2943 Query: 363 cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 422 ||| ||||||||||||| || || ||||||||| |||||||||||| || |||||||| Sbjct: 2942 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2883
>dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A13, full insert sequence Length = 3347 Score = 103 bits (52), Expect = 5e-19 Identities = 76/80 (95%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 136 gcctacaaagagaatgccgggtgcttcctt-cttccaggagcagggagacttcaaaaaac 194 |||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||| Sbjct: 3191 gcctacaatgagaatgccgggtgcttccttccttccaggagcaggg-gacttc-aaaaac 3134 Query: 195 aaacaccgagctcttccttt 214 |||||||||||||||||||| Sbjct: 3133 aaacaccgagctcttccttt 3114 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 1 atatttgagattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaattt 60 ||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| Sbjct: 3322 atatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaattc 3263 Query: 61 gtcggcccaaatgca 75 || ||||||||||| Sbjct: 3262 ctcagcccaaatgca 3248 Score = 63.9 bits (32), Expect = 4e-07 Identities = 98/120 (81%) Strand = Plus / Minus Query: 303 ctcttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgt 362 |||||| |||||||||||||| ||||| ||||||||||| ||| || |||| | | Sbjct: 3023 ctcttaaaatctgaaatccgggtcgacgtccattgcccacgaaaatttcgcaatgagtga 2964 Query: 363 cttgctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattct 422 ||| ||||||||||||| || || ||||||||| |||||||||||| || |||||||| Sbjct: 2963 tttgttgaaaatcttctcgatgggtacttcatggcgtttgcaccatgcaacagtaattct 2904
>gb|BT017514.1| Zea mays clone EL01N0419B06.c mRNA sequence Length = 522 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Plus Query: 307 tagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttg 366 ||||||||||| ||||| || || |||||||||||| |||| || || || | | ||| Sbjct: 287 tagaatctgaattccgggtcaacgtccattgcccatacaaatttcgcgaggagagatttg 346 Query: 367 ctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctagg 425 ||||||||||||||||||||||||||||| |||||||||||| || || |||||||| Sbjct: 347 ttgaaaatcttctcaatagggacttcatggcgtttgcaccatgccacggttattctagg 405 Score = 46.1 bits (23), Expect = 0.092 Identities = 43/47 (91%), Gaps = 2/47 (4%) Strand = Plus / Plus Query: 136 gcctacaaagagaatgccgggtgc-ttccttc-ttccaggagcaggg 180 |||||||||||||||| ||||||| ||||||| ||||| |||||||| Sbjct: 119 gcctacaaagagaatgacgggtgctttccttcgttccacgagcaggg 165 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 aaaaaacaaacaccgagctctt 209 |||||||||||||||||||||| Sbjct: 181 aaaaaacaaacaccgagctctt 202
>gb|AY108535.1| Zea mays PCO135925 mRNA sequence Length = 1700 Score = 85.7 bits (43), Expect = 1e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 307 tagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttg 366 ||||||||||| ||||| || || |||||||||||| |||| || || || | | ||| Sbjct: 1382 tagaatctgaattccgggtcaacgtccattgcccatacaaatttcgcgaggagagatttg 1323 Query: 367 ctgaaaatcttctcaatagggacttcatgggttttgcaccatgctaccgtaattctagg 425 ||||||||||||||||||||||||||||| |||||||||||| || || |||||||| Sbjct: 1322 ttgaaaatcttctcaatagggacttcatggcgtttgcaccatgccacggttattctagg 1264 Score = 46.1 bits (23), Expect = 0.092 Identities = 43/47 (91%), Gaps = 2/47 (4%) Strand = Plus / Minus Query: 136 gcctacaaagagaatgccgggtgc-ttccttc-ttccaggagcaggg 180 |||||||||||||||| ||||||| ||||||| ||||| |||||||| Sbjct: 1550 gcctacaaagagaatgacgggtgctttccttcgttccacgagcaggg 1504 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 188 aaaaaacaaacaccgagctctt 209 |||||||||||||||||||||| Sbjct: 1488 aaaaaacaaacaccgagctctt 1467
>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence Length = 138518 Score = 83.8 bits (42), Expect = 4e-13 Identities = 71/78 (91%), Gaps = 2/78 (2%) Strand = Plus / Minus Query: 136 gcctacaaagagaatgccgggtgcttccttc-ttccaggagcagggagac-ttcaaaaaa 193 |||||||||||||||||| ||||||||||| |||||||||||||| ||| || |||||| Sbjct: 106729 gcctacaaagagaatgccaagtgcttccttcgttccaggagcagggggacattgaaaaaa 106670 Query: 194 caaacaccgagctcttcc 211 ||||| |||||||||||| Sbjct: 106669 caaactccgagctcttcc 106652
>emb|AJ223326.1|DCAJ3326 Daucus carota mRNA for DNA topoisomerase I Length = 3086 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 306 ttagaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtctt 365 |||||||||||| |||||| |||||||||||||| |||||||||| |||| | ||| Sbjct: 2855 ttagaatctgaagctcggctcaacatccattgcccaggcaaactttgccagaagagactt 2796 Query: 366 gctgaaaatcttctcaatagggacttcat 394 | |||| ||||||||||| || ||||||| Sbjct: 2795 gttgaacatcttctcaatgggaacttcat 2767
>emb|Y14558.1|PSY14558 Pisum sativum mRNA for topoisomerase I Length = 3055 Score = 46.1 bits (23), Expect = 0.092 Identities = 41/47 (87%) Strand = Plus / Minus Query: 308 agaatctgaaatccggctcgacatccattgcccatccaaactttgca 354 ||||||||||||| || || |||||||||||||| |||| |||||| Sbjct: 2838 agaatctgaaatctgggtccacatccattgcccaagcaaattttgca 2792
>gb|AC101738.16| Mus musculus chromosome 1, clone RP23-472N5, complete sequence Length = 183026 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 293 gaatccaatactcttagaatct 314 |||||||||||||||||||||| Sbjct: 125538 gaatccaatactcttagaatct 125559
>gb|AC162299.6| Mus musculus chromosome 1, clone RP24-320H7, complete sequence Length = 130226 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 293 gaatccaatactcttagaatct 314 |||||||||||||||||||||| Sbjct: 14940 gaatccaatactcttagaatct 14961
>ref|NM_124913.2| Arabidopsis thaliana TOP1 (TOPOISOMERASE I) AT5G55310 (TOP1) mRNA, complete cds Length = 2838 Score = 40.1 bits (20), Expect = 5.7 Identities = 71/88 (80%) Strand = Plus / Minus Query: 308 agaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttgc 367 |||||||||| || || || |||||||||||||| | ||||| || |||| | |||| Sbjct: 2818 agaatctgaactcaggatcaacatccattgcccaagcgaacttagccagaagagacttgt 2759 Query: 368 tgaaaatcttctcaatagggacttcatg 395 | || ||||||||||| ||||| ||||| Sbjct: 2758 taaatatcttctcaatggggacatcatg 2731
>gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, complete sequence Length = 159888 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gttctcaacaagctaaaatt 59 |||||||||||||||||||| Sbjct: 147046 gttctcaacaagctaaaatt 147027
>emb|CR318646.27| Zebrafish DNA sequence from clone DKEY-83F18 in linkage group 22, complete sequence Length = 224271 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 72185 ttaggtgtccgggagaaggc 72166
>emb|BX664743.23| Zebrafish DNA sequence from clone DKEY-11D20 in linkage group 22, complete sequence Length = 180012 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 14054 ttaggtgtccgggagaaggc 14073
>emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 in linkage group 5, complete sequence Length = 190731 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 165287 ttaggtgtccgggagaaggc 165306
>emb|CR846087.30| Zebrafish DNA sequence from clone DKEY-196N19 in linkage group 8, complete sequence Length = 232595 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 192766 ttaggtgtccgggagaaggc 192785
>emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chromosome 9 Contains a programmed cell death 2 (PDCD2) pseudogene, the 5' end of the gene for a novel C2H2 type zinc finger protein and two CpG islands, complete sequence Length = 184302 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 ccttcttccaggagcagggagact 185 |||||| ||||||||||||||||| Sbjct: 181615 ccttctcccaggagcagggagact 181592
>emb|AL035669.43|HS885L7 Human DNA sequence from clone RP5-885L7 on chromosome 20q13.2-13.33 Contains the 3' end of the NTSR1 gene for high affinity neurotensin receptor 1, the C20orf20 gene, the OGFR gene for opioid growth factor receptor, the COL9A3 gene for collagen IX alpha 3, the C20orf143 gene, the TCFL5 gene for basic helix-loop-helix transcription factor-like 5, the ARF4P2 gene for ADP-ribosylation factor 4 pseudogene 2, the 3' end of the DATF1 gene for death associated transcription factor 1, two novel genes and seven CpG islands, complete sequence Length = 160241 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 gtgtccgggagaaggcctggaagc 256 ||||| |||||||||||||||||| Sbjct: 27939 gtgtctgggagaaggcctggaagc 27962
>gb|AY080864.1| Arabidopsis thaliana putative DNA topoisomerase I (At5g55310) mRNA, partial cds Length = 928 Score = 40.1 bits (20), Expect = 5.7 Identities = 71/88 (80%) Strand = Plus / Minus Query: 308 agaatctgaaatccggctcgacatccattgcccatccaaactttgcaagaatcgtcttgc 367 |||||||||| || || || |||||||||||||| | ||||| || |||| | |||| Sbjct: 681 agaatctgaactcaggatcaacatccattgcccaagcgaacttagccagaagagacttgt 622 Query: 368 tgaaaatcttctcaatagggacttcatg 395 | || ||||||||||| ||||| ||||| Sbjct: 621 taaatatcttctcaatggggacatcatg 594
>emb|AL591172.3| Zebrafish DNA sequence from clone BUSM1-48C11 Contains two novel genes, two novel genes for a proteins similar to MHC class II alpha and beta chain, the putative novel transposon LDR1 and three CpG islands, complete sequence Length = 106049 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 79439 ttaggtgtccgggagaaggc 79420
>emb|CR293521.11| Zebrafish DNA sequence from clone CH211-152F22 in linkage group 12, complete sequence Length = 152631 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 22495 ttaggtgtccgggagaaggc 22514
>emb|BX088603.12| Zebrafish DNA sequence from clone DKEYP-44D3, complete sequence Length = 177056 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 22439 ttaggtgtccgggagaaggc 22420
>emb|BX119905.13| Zebrafish DNA sequence from clone CH211-209H17, complete sequence Length = 50366 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 3014 ttaggtgtccgggagaaggc 2995
>emb|BX323555.10| Zebrafish DNA sequence from clone DKEY-163M14 in linkage group 21, complete sequence Length = 180416 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 109378 ttaggtgtccgggagaaggc 109359
>gb|AC011731.8|AC011731 Homo sapiens, clone RP11-17J14, complete sequence Length = 157183 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 aatcttctcaatagggactt 391 |||||||||||||||||||| Sbjct: 77018 aatcttctcaatagggactt 77037
>emb|BX321870.12| Zebrafish DNA sequence from clone RP71-42A14 in linkage group 22, complete sequence Length = 165445 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 64351 ttaggtgtccgggagaaggc 64332
>emb|BX004992.13| Zebrafish DNA sequence from clone CH211-120E13 in linkage group 16, complete sequence Length = 195432 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 47392 ttaggtgtccgggagaaggc 47411
>emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 in linkage group 20, complete sequence Length = 146407 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 91527 ttaggtgtccgggagaaggc 91546
>emb|BX088560.7| Zebrafish DNA sequence from clone DKEY-237O15 in linkage group 10, complete sequence Length = 156486 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 24363 ttaggtgtccgggagaaggc 24344
>emb|AJ504425.1|CGR504425 Cricetulus griseus partial mRNA for multidrug resistance-associated protein 1 (abcc1 gene) Length = 683 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ggagaaggcctggaagctga 259 |||||||||||||||||||| Sbjct: 265 ggagaaggcctggaagctga 284
>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence Length = 178509 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gttctcaacaagctaaaatt 59 |||||||||||||||||||| Sbjct: 177459 gttctcaacaagctaaaatt 177478
>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25, complete sequence Length = 196037 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 185657 ttaggtgtccgggagaaggc 185676
>emb|BX936450.6| Zebrafish DNA sequence from clone CH211-232I12 in linkage group 17, complete sequence Length = 167918 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ttaggtgtccgggagaaggc 248 |||||||||||||||||||| Sbjct: 117478 ttaggtgtccgggagaaggc 117459
>emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on chromosome 14, complete sequence Length = 216611 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aatgtccatcagttctcaac 48 |||||||||||||||||||| Sbjct: 45954 aatgtccatcagttctcaac 45973
>gb|U60440.1|DCU60440 Daucus carota topoisomerase I (Top1) mRNA, complete cds Length = 2803 Score = 40.1 bits (20), Expect = 5.7 Identities = 56/68 (82%) Strand = Plus / Minus Query: 328 acatccattgcccatccaaactttgcaagaatcgtcttgctgaaaatcttctcaataggg 387 |||||||| ||||| |||| ||||| |||| | |||| |||| |||||||||||||| Sbjct: 2625 acatccatagcccaagcaaattttgccagaagagacttgttgaatatcttctcaatagga 2566 Query: 388 acttcatg 395 || ||||| Sbjct: 2565 acgtcatg 2558 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,383,290 Number of Sequences: 3902068 Number of extensions: 4383290 Number of successful extensions: 86691 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 86559 Number of HSP's gapped (non-prelim): 118 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)