ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IL22_MOUSE (Q9JJY9) Interleukin-22 precursor (IL-22) (IL-10-rela... 30 4.1
2IL22B_MOUSE (Q9JJY8) Interleukin-22b precursor (IL-22b) (IL-10-r... 29 5.3
3ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7 29 6.9
4GAF1_SCHPO (Q10280) Transcription factor gaf1 (Gaf-1) 29 6.9

>IL22_MOUSE (Q9JJY9) Interleukin-22 precursor (IL-22) (IL-10-related|
           T-cell-derived-inducible factor) (IL-TIF) (IL-TIF alpha)
           (Interleukin-22a) (IL-22a)
          Length = 179

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 192 SSSILLVVLWAVENSSYPVASWCKVE 269
           +S +LL+ LWA E ++ PV + CK+E
Sbjct: 18  ASCLLLIALWAQEANALPVNTRCKLE 43



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>IL22B_MOUSE (Q9JJY8) Interleukin-22b precursor (IL-22b) (IL-10-related|
           T-cell-derived-inducible factor beta) (IL-TIFb) (IL-TIF
           beta)
          Length = 179

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 192 SSSILLVVLWAVENSSYPVASWCKVE 269
           +S +LL+ LWA E ++ P+ + CK+E
Sbjct: 18  ASCLLLIALWAQEANALPINTRCKLE 43



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>ZIMP7_MOUSE (Q8CIE2) PIAS-like protein Zimp7|
          Length = 920

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = -3

Query: 430 SEMTCSGSGASAGLR-KIHYDSPSSIMAQGKD*TWYSQAKCTATAQAGPRDACIYSTLHQ 254
           S  T   +G  AGL    H   PS+   Q       + A  TATA A    A +     Q
Sbjct: 118 SSFTTGYAGGPAGLGLPTHAARPSTDFTQAAAAAAMAAAAATATATATATVAALQEKQSQ 177

Query: 253 EATGYDEFSTAQRTTSNMLE 194
           E + Y    T Q   S  L+
Sbjct: 178 ELSQYGAMGTGQSFNSQFLQ 197



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>GAF1_SCHPO (Q10280) Transcription factor gaf1 (Gaf-1)|
          Length = 855

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 439 DLNSEMTCSGSGASAGLRKIHYDSPSSIMAQGKD 338
           +LN+ +   G G S GL   H DS  S M QGK+
Sbjct: 773 NLNAGVNDFGLGFSEGLGSAHLDSNDSSMVQGKN 806


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,346,865
Number of Sequences: 219361
Number of extensions: 1620720
Number of successful extensions: 3472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3471
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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