ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associate... 32 0.79
2ASPM_MACMU (P62292) Abnormal spindle-like microcephaly-associate... 31 1.3
3ASPM_MACFA (P62291) Abnormal spindle-like microcephaly-associate... 31 1.3
4PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacema... 30 3.9
5TAOK2_XENLA (Q6GPK9) Serine/threonine-protein kinase TAO2 (EC 2.... 29 5.1
6DPH1_SCHPO (O59713) Diphthamide biosynthesis protein 1 28 8.7
7ALG9_MOUSE (Q8VDI9) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1... 28 8.7
8ALG9_HUMAN (Q9H6U8) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1... 28 8.7

>ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associated protein|
            homolog (Fragment)
          Length = 3461

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 353  WKIAPLLACAEHSACHSNGRSSSTGQNLLRKS 448
            W  A L+AC++ + CHS GR++ T Q    K+
Sbjct: 2798 WHRASLVACSQEAECHSQGRAAVTIQKAFCKT 2829



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>ASPM_MACMU (P62292) Abnormal spindle-like microcephaly-associated protein|
            homolog
          Length = 3479

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 353  WKIAPLLACAEHSACHSNGRSSSTGQNLLRK 445
            W  A  LAC++ + CHS  R++ T QN  R+
Sbjct: 2800 WYKASDLACSQEAECHSQSRAAVTIQNAFRR 2830



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>ASPM_MACFA (P62291) Abnormal spindle-like microcephaly-associated protein|
            homolog
          Length = 3476

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 353  WKIAPLLACAEHSACHSNGRSSSTGQNLLRK 445
            W  A  LAC++ + CHS  R++ T QN  R+
Sbjct: 2797 WYKASDLACSQEAECHSQSRAAVTIQNAFRR 2827



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>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein|
           Rigui) (hPER)
          Length = 1290

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +1

Query: 67  SPFGMRSSNHGPAPRSVTTYKQHSLWKLVQYKHHH*PLARRYMYSSFALP 216
           S  G R  +HGPAP S    + H   K  + +HH  P A    Y S   P
Sbjct: 815 SALGERGCHHGPAPPS---RRHHCRSKAKRSRHHQNPRAEAPCYVSHPSP 861



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>TAOK2_XENLA (Q6GPK9) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand|
            and one amino acid protein 2)
          Length = 1025

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +2

Query: 311  TKMSPPF-HWNKHPMWKIAPLLACAEHSACHSNGRSSSTGQN----LLRKSCQPL 460
            T ++PP   W  HP    + L A    S+  S+  SSS+G      LLR S QPL
Sbjct: 939  TLLAPPSASWGLHPPGSSSSLSALPSSSSSSSSSPSSSSGGRPGLLLLRNSPQPL 993



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>DPH1_SCHPO (O59713) Diphthamide biosynthesis protein 1|
          Length = 436

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 365 GQFSTLDAYSNGMADSFLSKPWLYSYPNPMVNP 267
           GQFS +DA+   +A   LS  W Y++P P++ P
Sbjct: 355 GQFSDIDAWIQ-VACPRLSIDWGYAFPAPLLTP 386



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>ALG9_MOUSE (Q8VDI9) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1.-)|
           (Asparagine-linked glycosylation protein 9 homolog)
           (Disrupted in bipolar disorder protein 1 homolog)
          Length = 611

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 385 LCTGQERGNFPHWMLIPMEWRTHFCPS 305
           +C G+E   FP   L+P  W+  F PS
Sbjct: 466 VCVGKEWYRFPSSFLLPDNWQLQFIPS 492



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>ALG9_HUMAN (Q9H6U8) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1.-)|
           (Asparagine-linked glycosylation protein 9 homolog)
           (Disrupted in bipolar disorder protein 1)
          Length = 611

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 385 LCTGQERGNFPHWMLIPMEWRTHFCPS 305
           +C G+E   FP   L+P  W+  F PS
Sbjct: 466 VCVGKEWYRFPSSFLLPDNWQLQFIPS 492


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,316,202
Number of Sequences: 219361
Number of extensions: 1718380
Number of successful extensions: 4170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4169
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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