ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA 56 8e-05
2ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 8e-05
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
4dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
5dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
6dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
7gb|AY104160.1| Zea mays PCO080306 mRNA sequence 48 0.019
8gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, comp... 44 0.30
9gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, com... 42 1.2
10gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence 42 1.2
11emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 42 1.2
12emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in ... 42 1.2
13dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 1.2
14ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phos... 40 4.7
15gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cance... 40 4.7
16gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, com... 40 4.7
17gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genom... 40 4.7
18ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 4.7
19ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 4.7
20gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, com... 40 4.7
21emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 i... 40 4.7
22gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p... 40 4.7
23gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complet... 40 4.7
24gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, c... 40 4.7
25gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3... 40 4.7
26emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 4.7
27emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in... 40 4.7
28emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 i... 40 4.7
29gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complet... 40 4.7
30emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chr... 40 4.7
31emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chr... 40 4.7 
>ref|XM_464147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3121

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 319  tccctcactcctcgtggtattccgggttcttcttca 354
            |||||||||||||||  |||||||||||||||||||
Sbjct: 2770 tccctcactcctcgttatattccgggttcttcttca 2735
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>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA
          Length = 3169

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 319  tccctcactcctcgtggtattccgggttcttcttca 354
            |||||||||||||||  |||||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttca 2742
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 319     tccctcactcctcgtggtattccgggttcttcttca 354
               |||||||||||||||  |||||||||||||||||||
Sbjct: 2570749 tccctcactcctcgttatattccgggttcttcttca 2570714
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>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_C03
          Length = 103297

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 319   tccctcactcctcgtggtattccgggttcttcttca 354
             |||||||||||||||  |||||||||||||||||||
Sbjct: 49532 tccctcactcctcgttatattccgggttcttcttca 49497
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>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full
            insert sequence
          Length = 3120

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 319  tccctcactcctcgtggtattccgggttcttcttca 354
            |||||||||||||||  |||||||||||||||||||
Sbjct: 2769 tccctcactcctcgttatattccgggttcttcttca 2734
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>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full
            insert sequence
          Length = 3169

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 319  tccctcactcctcgtggtattccgggttcttcttca 354
            |||||||||||||||  |||||||||||||||||||
Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttca 2742
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>gb|AY104160.1| Zea mays PCO080306 mRNA sequence
          Length = 1460

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 323  tcactcctcgtggtattccgggttcttcttca 354
            ||||||||||||||| || |||||||||||||
Sbjct: 1044 tcactcctcgtggtactctgggttcttcttca 1013
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>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence
          Length = 202294

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 174   aataaaaatgtttttggatgaa 195
             ||||||||||||||||||||||
Sbjct: 56757 aataaaaatgtttttggatgaa 56736
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>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 25    tacacacttgatacatataca 45
             |||||||||||||||||||||
Sbjct: 48749 tacacacttgatacatataca 48729
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>gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence
          Length = 1023

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 323 tcactcctcgtggtattccgggttcttcttcaa 355
           |||||| || ||||| |||||||||||||||||
Sbjct: 595 tcactcttcatggtactccgggttcttcttcaa 563
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>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
              complete sequence
          Length = 143425

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     cacacttgatacatatacaaa 47
              |||||||||||||||||||||
Sbjct: 114349 cacacttgatacatatacaaa 114369



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     cacacttgatacatatacaaa 47
              |||||||||||||||||||||
Sbjct: 104510 cacacttgatacatatacaaa 104530
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>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete
              sequence
          Length = 181415

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     cacacttgatacatatacaaa 47
              |||||||||||||||||||||
Sbjct: 154850 cacacttgatacatatacaaa 154830
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>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130006D24 product:unclassifiable, full
            insert sequence
          Length = 3651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 25   tacacacttgatacatataca 45
            |||||||||||||||||||||
Sbjct: 2970 tacacacttgatacatataca 2990
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>ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phosphodiesterase/ kinase
            AT1G66980 mRNA, complete cds
          Length = 3512

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  taaaaatgtttttggatgaa 195
            ||||||||||||||||||||
Sbjct: 3459 taaaaatgtttttggatgaa 3440
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>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205032

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     acacacttgatacatataca 45
              ||||||||||||||||||||
Sbjct: 184660 acacacttgatacatataca 184679
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>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence
          Length = 179807

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    acacacttgatacatataca 45
             ||||||||||||||||||||
Sbjct: 23843 acacacttgatacatataca 23862
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>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete
             sequence
          Length = 90387

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   taaaaatgtttttggatgaa 195
             ||||||||||||||||||||
Sbjct: 27065 taaaaatgtttttggatgaa 27084
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>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0)
           partial mRNA
          Length = 287

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  acatatacaaataagcttaa 56
           ||||||||||||||||||||
Sbjct: 213 acatatacaaataagcttaa 232
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>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0)
           partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  cacttgatacatatacaaat 48
           ||||||||||||||||||||
Sbjct: 599 cacttgatacatatacaaat 618
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>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence
          Length = 131548

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     cagttctaaagatgtaactt 20
             ||||||||||||||||||||
Sbjct: 64502 cagttctaaagatgtaactt 64521
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>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1,
             complete sequence
          Length = 121187

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   ctccaaaaacttgcatcaga 301
             ||||||||||||||||||||
Sbjct: 30564 ctccaaaaacttgcatcaga 30545
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>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence
          Length = 162949

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    atgccgaggtgtaagagcat 225
              ||||||||||||||||||||
Sbjct: 107859 atgccgaggtgtaagagcat 107878
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>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence
          Length = 151297

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   tccctcactcctcgtggtat 338
             ||||||||||||||||||||
Sbjct: 66748 tccctcactcctcgtggtat 66729
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>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence
          Length = 162101

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     cagttctaaagatgtaactt 20
             ||||||||||||||||||||
Sbjct: 67063 cagttctaaagatgtaactt 67044
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>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence
          Length = 184579

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   atgccgaggtgtaagagcat 225
             ||||||||||||||||||||
Sbjct: 65374 atgccgaggtgtaagagcat 65393
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>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    taaaaatgtttttggatgaa 195
              ||||||||||||||||||||
Sbjct: 161862 taaaaatgtttttggatgaa 161843
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>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1,
              complete sequence
          Length = 130339

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    ctccaaaaacttgcatcaga 301
              ||||||||||||||||||||
Sbjct: 100541 ctccaaaaacttgcatcaga 100560
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>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tacacacttgatacatatac 44
             ||||||||||||||||||||
Sbjct: 49955 tacacacttgatacatatac 49936
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>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence
          Length = 131867

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tttttggatgaaccaccagc 203
             ||||||||||||||||||||
Sbjct: 64488 tttttggatgaaccaccagc 64507
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>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete
             sequence
          Length = 151493

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   aataaaaatgtttttggatg 193
             ||||||||||||||||||||
Sbjct: 61609 aataaaaatgtttttggatg 61590
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>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete
             sequence
          Length = 221374

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    acacacttgatacatataca 45
             ||||||||||||||||||||
Sbjct: 64556 acacacttgatacatataca 64575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,411,974
Number of Sequences: 3902068
Number of extensions: 3411974
Number of successful extensions: 61598
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61507
Number of HSP's gapped (non-prelim): 91
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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