>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 41/65 (63%), Positives = 56/65 (86%), Gaps = 3/65 (4%)
 Frame = -1

Query: 449  LDGECGYIAANLYAKSVFGEDALVNISIEKQI---DGKLSGYIRIRSKTQGIALSLGDKI 279
            L G+CG++AAN+YAKS+FGE+AL N+SIEK +   D K++G+IRIR+K+QG+ALSLGDKI
Sbjct: 894  LSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKI 953

Query: 278  TLKQK 264
            +  QK
Sbjct: 954  SSSQK 958

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 42/66 (63%), Positives = 54/66 (81%), Gaps = 4/66 (6%)
 Frame = -1

Query: 449  LDGECGYIAANLYAKSVFGEDALVNISIEKQI----DGKLSGYIRIRSKTQGIALSLGDK 282
            L G CG++AANLYA+S+FGEDAL N+SIEK +    D  ++G+IRIR+K+QG+ALSLGDK
Sbjct: 884  LSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDK 943

Query: 281  ITLKQK 264
            I L QK
Sbjct: 944  INLSQK 949

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 42/66 (63%), Positives = 54/66 (81%), Gaps = 4/66 (6%)
 Frame = -1

Query: 449  LDGECGYIAANLYAKSVFGEDALVNISIEKQI----DGKLSGYIRIRSKTQGIALSLGDK 282
            L G CG++AANLYA+S+FGEDAL N+SIEK +    D  ++G+IRIR+K+QG+ALSLGDK
Sbjct: 884  LSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDK 943

Query: 281  ITLKQK 264
            I L QK
Sbjct: 944  INLSQK 949

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 36/54 (66%), Positives = 49/54 (90%)
 Frame = -1

Query: 449  LDGECGYIAANLYAKSVFGEDALVNISIEKQIDGKLSGYIRIRSKTQGIALSLG 288
            L G+CG+++ANLYA S+FGEDAL+++S+EK + G +SG++RIRSKTQGIALSLG
Sbjct: 884  LRGDCGFLSANLYACSIFGEDALMSLSVEKSVSGPISGHVRIRSKTQGIALSLG 937

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 4/66 (6%)
 Frame = -1

Query: 449  LDGECGYIAANLYAKSVFGEDALVNISIEKQI----DGKLSGYIRIRSKTQGIALSLGDK 282
            L G CG++AANLYA+S+FGEDAL N+S EK +    D  ++ +IRIR+K+QG+ALSLGDK
Sbjct: 884  LSGYCGFMAANLYARSIFGEDALANVSSEKPLHQGPDAAVTVHIRIRAKSQGMALSLGDK 943

Query: 281  ITLKQK 264
            I L QK
Sbjct: 944  INLSQK 949

>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)|
           (Beta-COP) (Fragment)
          Length = 400

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 39/57 (68%), Positives = 47/57 (82%)
 Frame = -1

Query: 449 LDGECGYIAANLYAKSVFGEDALVNISIEKQIDGKLSGYIRIRSKTQGIALSLGDKI 279
           L  + G ++ANL AKSVFGEDAL NI IEKQ DGK+SGYIRIR+K Q IA++LG+KI
Sbjct: 337 LSNDTGILSANLCAKSVFGEDALANICIEKQADGKISGYIRIRAKVQSIAVTLGEKI 393

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
 Frame = -1

Query: 446  DGECGYIAANLYAKSVFGEDALVNISIEKQIDGKLS---GYIRIRSKTQGIALSLGDKIT 276
            + +C +++ NLYAKS FGEDAL N+ IEK  D K +   GY+RIRSK QG+ALSLGD++ 
Sbjct: 902  EDDCRFLSCNLYAKSSFGEDALANLCIEK--DSKTNDVIGYVRIRSKGQGLALSLGDRVA 959

Query: 275  LKQK 264
            L  K
Sbjct: 960  LIAK 963

>RL21_PYUST (P49667) 60S ribosomal protein L21 (Fragment)|
          Length = 155

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = -2

Query: 202 QEIHLRVSYYRHSGLNTRIFFVQKIKENDEKRR 104
           + I++R+ + +HS   +RI F+Q++ EN+ KR+
Sbjct: 85  KRINVRIEHIKHS--KSRISFIQRVHENERKRK 115

>YJI4_YEAST (P47029) Protein YJL084C|
          Length = 1046

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 279 NLISQAERDSLCLAPYSDVTTKLAIDLLLNADVHQSIFSEHTLGIKISSN 428
           NL+ +A   S+    Y   TT +  DLL N   H    S H   I  SSN
Sbjct: 216 NLLKRATSPSVSHHNYKPTTTSIFSDLLNNTFTHNDAASHHGHHIPTSSN 265

>PPOC_ARATH (P55826) Protoporphyrinogen oxidase, chloroplast precursor (EC|
           1.3.3.4) (PPO)
          Length = 537

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
 Frame = -1

Query: 425 AANLYAKSVFGEDALVNISIEKQ-------IDGKLSGYIRIRSKTQGI 303
           AAN  +K  +   A V+IS  K+       IDG+L G+ ++  +TQG+
Sbjct: 353 AANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQGV 400

>RL21_RAT (P20280) 60S ribosomal protein L21|
          Length = 159

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/33 (33%), Positives = 25/33 (75%)
 Frame = -2

Query: 202 QEIHLRVSYYRHSGLNTRIFFVQKIKENDEKRR 104
           + I++R+ + +HS   +R  F++++KEND+K++
Sbjct: 86  KRINVRIEHIKHS--KSRDSFLKRVKENDQKKK 116

>RL21_MOUSE (O09167) 60S ribosomal protein L21|
          Length = 159

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/33 (33%), Positives = 25/33 (75%)
 Frame = -2

Query: 202 QEIHLRVSYYRHSGLNTRIFFVQKIKENDEKRR 104
           + I++R+ + +HS   +R  F++++KEND+K++
Sbjct: 86  KRINVRIEHIKHS--KSRDSFLKRVKENDQKKK 116

>RL21_HUMAN (P46778) 60S ribosomal protein L21|
          Length = 159

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/33 (33%), Positives = 25/33 (75%)
 Frame = -2

Query: 202 QEIHLRVSYYRHSGLNTRIFFVQKIKENDEKRR 104
           + I++R+ + +HS   +R  F++++KEND+K++
Sbjct: 86  KRINVRIEHIKHS--KSRDSFLKRVKENDQKKK 116

>RL21_CHILA (Q6QN05) 60S ribosomal protein L21|
          Length = 159

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/33 (33%), Positives = 25/33 (75%)
 Frame = -2

Query: 202 QEIHLRVSYYRHSGLNTRIFFVQKIKENDEKRR 104
           + I++R+ + +HS   +R  F++++KEND+K++
Sbjct: 86  KRINVRIEHIKHS--KSRDSFLKRVKENDQKKK 116

>PERC_AEDAE (P82600) Chorion peroxidase precursor (EC 1.11.1.7) [Contains:|
           Chorion peroxidase light chain; Chorion peroxidase heavy
           chain]
          Length = 791

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 289 EIRLPSSRREAVNFDVTCSQTPD 221
           + +LP+SR E  NFD T +Q PD
Sbjct: 26  QCKLPTSRSEIPNFDYTVAQQPD 48

>MRAW_VIBF1 (Q5E2P2) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 316

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = -3

Query: 399 VRRRCFGEHQH*EANRWQA*WLHQNKEQDTRNRAQLGR*DYPQAEGRQLILMLPAHKHRM 220
           V  + F E +H     +QA  ++ N E D  + A  G  D    EGR  ++   + + RM
Sbjct: 193 VAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVISFHSLEDRM 252

Query: 219 V*HVSFKRS 193
           V H   K S
Sbjct: 253 VKHFIRKES 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,206,727
Number of Sequences: 219361
Number of extensions: 1019015
Number of successful extensions: 2400
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2395
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)