ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 218 1e-53
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
4dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
5dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
6gb|AY103740.1| Zea mays PCO120652 mRNA sequence 216 5e-53
7gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 163 6e-37
8gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 163 6e-37
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 163 6e-37
10dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 6e-37
11dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 6e-37
12dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 6e-37
13dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 6e-37
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 163 6e-37
15gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence 159 9e-36
16gb|AY109245.1| Zea mays PCO147899 mRNA sequence 133 5e-28
17gb|AC026791.4|AC026791 Homo sapiens chromosome 5 clone CTD-2265D... 48 0.025
18ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490... 46 0.098
19ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480... 46 0.098
20gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, comp... 46 0.098
21gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, com... 46 0.098
22gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, co... 46 0.098
23emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BA... 46 0.098
24emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, ... 46 0.098
25dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, ... 46 0.098
26gb|AC121353.2| Rattus norvegicus chromosome 1 clone RP32-274I11 ... 42 1.5
27ref|NM_001016394.2| Xenopus tropicalis hypothetical protein LOC5... 40 6.0
28gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete seq... 40 6.0
29emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.0
30ref|XM_721098.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.0
31gb|AC089996.12| Homo sapiens 12 BAC RP11-76M15 (Roswell Park Can... 40 6.0
32gb|AC105204.5| Homo sapiens chromosome 15, clone RP11-1087J2, co... 40 6.0
33gb|AC112724.3| Homo sapiens BAC clone RP11-811L19 from 4, comple... 40 6.0
34gb|AC079208.4| Homo sapiens chromosome 15, clone RP11-1149K15, c... 40 6.0
35ref|XM_694569.1| PREDICTED: Danio rerio similar to egf-like modu... 40 6.0
36gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, compl... 40 6.0
37gb|AC020783.8| Homo sapiens chromosome 8, clone RP11-16M2, compl... 40 6.0
38gb|AC013551.10| Homo sapiens chromosome 15, clone RP11-133P13, c... 40 6.0
39gb|AC150280.2| Pan troglodytes BAC clone CH251-20M5 from chromos... 40 6.0
40gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ... 40 6.0
41gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, com... 40 6.0
42gb|AC147873.3| Monodelphis domestica clone VMRC6-582D4, complete... 40 6.0
43emb|CR761165.2| Xenopus tropicalis finished cDNA, clone TEgg054k06 40 6.0
44dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 6.0
45gb|AC115876.18| Mus musculus chromosome 1, clone RP24-356G6, com... 40 6.0
46gb|AC125525.3| Mus musculus BAC clone RP24-395H10 from 1, comple... 40 6.0
47gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 6.0
48emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on ch... 40 6.0
49dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 6.0
50dbj|AP001577.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 6.0 
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Minus

                                                                        
Query: 252  ttaactgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttg 311
            ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 3052

                                                                        
Query: 312  tgtcttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgct 371
             ||||||||||||||||||||||||||||| ||||||||||| |  |||||||| |||||
Sbjct: 3051 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 2992

                                                                        
Query: 372  gatgttcaccaaagcatcttctccgaacacactcttggcataaagattagcagcaatgta 431
            ||| || |||||||||||||| ||||| |||||||| |||||||| ||||| || |   |
Sbjct: 2991 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 2932

                              
Query: 432  accgcattccccgtcaag 449
            ||||||||| ||||||||
Sbjct: 2931 accgcattctccgtcaag 2914
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Plus

                                                                            
Query: 252      ttaactgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttg 311
                ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 10020896

                                                                            
Query: 312      tgtcttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgct 371
                 ||||||||||||||||||||||||||||| ||||||||||| |  |||||||| |||||
Sbjct: 10020897 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 10020956

                                                                            
Query: 372      gatgttcaccaaagcatcttctccgaacacactcttggcataaagattagcagcaatgta 431
                ||| || |||||||||||||| ||||| |||||||| |||||||| ||||| || |   |
Sbjct: 10020957 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 10021016

                                  
Query: 432      accgcattccccgtcaag 449
                ||||||||| ||||||||
Sbjct: 10021017 accgcattctccgtcaag 10021034
to top
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Plus

                                                                          
Query: 252    ttaactgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttg 311
              ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 101178

                                                                          
Query: 312    tgtcttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgct 371
               ||||||||||||||||||||||||||||| ||||||||||| |  |||||||| |||||
Sbjct: 101179 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 101238

                                                                          
Query: 372    gatgttcaccaaagcatcttctccgaacacactcttggcataaagattagcagcaatgta 431
              ||| || |||||||||||||| ||||| |||||||| |||||||| ||||| || |   |
Sbjct: 101239 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 101298

                                
Query: 432    accgcattccccgtcaag 449
              ||||||||| ||||||||
Sbjct: 101299 accgcattctccgtcaag 101316
to top
>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Plus

                                                                         
Query: 252   ttaactgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttg 311
             ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 48453

                                                                         
Query: 312   tgtcttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgct 371
              ||||||||||||||||||||||||||||| ||||||||||| |  |||||||| |||||
Sbjct: 48454 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 48513

                                                                         
Query: 372   gatgttcaccaaagcatcttctccgaacacactcttggcataaagattagcagcaatgta 431
             ||| || |||||||||||||| ||||| |||||||| |||||||| ||||| || |   |
Sbjct: 48514 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 48573

                               
Query: 432   accgcattccccgtcaag 449
             ||||||||| ||||||||
Sbjct: 48574 accgcattctccgtcaag 48591
to top
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  218 bits (110), Expect = 1e-53
 Identities = 176/198 (88%)
 Strand = Plus / Plus

                                                                          
Query: 252    ttaactgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttg 311
              ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 115389

                                                                          
Query: 312    tgtcttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgct 371
               ||||||||||||||||||||||||||||| ||||||||||| |  |||||||| |||||
Sbjct: 115390 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 115449

                                                                          
Query: 372    gatgttcaccaaagcatcttctccgaacacactcttggcataaagattagcagcaatgta 431
              ||| || |||||||||||||| ||||| |||||||| |||||||| ||||| || |   |
Sbjct: 115450 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 115509

                                
Query: 432    accgcattccccgtcaag 449
              ||||||||| ||||||||
Sbjct: 115510 accgcattctccgtcaag 115527
to top
>gb|AY103740.1| Zea mays PCO120652 mRNA sequence
          Length = 1013

 Score =  216 bits (109), Expect = 5e-53
 Identities = 178/201 (88%)
 Strand = Plus / Minus

                                                                       
Query: 246 tcaaaattaactgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgat 305
           ||||| ||||||||| |||||||||||||| |||||||| || || |||||||| || ||
Sbjct: 637 tcaaagttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgcaat 578

                                                                       
Query: 306 tccttgtgtcttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctc 365
           ||| || |||||||||||||||| |||||||||||| |||||||||||   |||||||||
Sbjct: 577 tccctgggtcttgctccttattcggatgtaaccactgagcttgccatcatgttgcttctc 518

                                                                       
Query: 366 aatgctgatgttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
           |||||||||||||||||||||||| || || ||||||||||| |||||||||||||||||
Sbjct: 517 aatgctgatgttcaccaaagcatcctcaccaaacacactctttgcataaagattagcagc 458

                                
Query: 426 aatgtaaccgcattccccgtc 446
           || | |||| ||||| |||||
Sbjct: 457 aaggaaaccacattctccgtc 437
to top
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Plus

                                                                         
Query: 256   ctgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtc 315
             |||||||||||||| |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 16609

                                                                         
Query: 316   ttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatg 375
             || |||| ||||||||| || ||||| ||||||||||||  |||||| |||| |||||||
Sbjct: 16610 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 16669

                                                               
Query: 376   ttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
             |||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 16670 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagc 16719
to top
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Plus

                                                                          
Query: 256    ctgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtc 315
              |||||||||||||| |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 166074

                                                                          
Query: 316    ttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatg 375
              || |||| ||||||||| || ||||| ||||||||||||  |||||| |||| |||||||
Sbjct: 166075 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 166134

                                                                
Query: 376    ttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
              |||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 166135 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagc 166184
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Plus

                                                                           
Query: 256     ctgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtc 315
               |||||||||||||| |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3648937

                                                                           
Query: 316     ttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatg 375
               || |||| ||||||||| || ||||| ||||||||||||  |||||| |||| |||||||
Sbjct: 3648938 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 3648997

                                                                 
Query: 376     ttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
               |||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 3648998 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagc 3649047
to top
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
            insert sequence
          Length = 3332

 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Minus

                                                                        
Query: 256  ctgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtc 315
            |||||||||||||| |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                                                                        
Query: 316  ttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatg 375
            || |||| ||||||||| || ||||| ||||||||||||  |||||| |||| |||||||
Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2849

                                                              
Query: 376  ttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
            |||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 2848 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagc 2799
to top
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
            insert sequence
          Length = 3332

 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Minus

                                                                        
Query: 256  ctgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtc 315
            |||||||||||||| |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909

                                                                        
Query: 316  ttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatg 375
            || |||| ||||||||| || ||||| ||||||||||||  |||||| |||| |||||||
Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2849

                                                              
Query: 376  ttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
            |||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 2848 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagc 2799
to top
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
            insert sequence
          Length = 3363

 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Minus

                                                                        
Query: 256  ctgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtc 315
            |||||||||||||| |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2940

                                                                        
Query: 316  ttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatg 375
            || |||| ||||||||| || ||||| ||||||||||||  |||||| |||| |||||||
Sbjct: 2939 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2880

                                                              
Query: 376  ttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
            |||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 2879 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagc 2830
to top
>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full
            insert sequence
          Length = 1741

 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Minus

                                                                        
Query: 256  ctgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtc 315
            |||||||||||||| |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 1318

                                                                        
Query: 316  ttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatg 375
            || |||| ||||||||| || ||||| ||||||||||||  |||||| |||| |||||||
Sbjct: 1317 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 1258

                                                              
Query: 376  ttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
            |||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 1257 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagc 1208
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  163 bits (82), Expect = 6e-37
 Identities = 148/170 (87%)
 Strand = Plus / Plus

                                                                           
Query: 256     ctgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtc 315
               |||||||||||||| |||||||| ||||| || || |||||||| ||||||||||| |||
Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3657631

                                                                           
Query: 316     ttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatg 375
               || |||| ||||||||| || ||||| ||||||||||||  |||||| |||| |||||||
Sbjct: 3657632 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 3657691

                                                                 
Query: 376     ttcaccaaagcatcttctccgaacacactcttggcataaagattagcagc 425
               |||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct: 3657692 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagc 3657741
to top
>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence
          Length = 1032

 Score =  159 bits (80), Expect = 9e-36
 Identities = 164/192 (85%)
 Strand = Plus / Minus

                                                                       
Query: 252 ttaactgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttg 311
           ||||||||| || ||||||||||| || ||||| || || |||||||| || ||||| ||
Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgcaattccctg 579

                                                                       
Query: 312 tgtcttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgct 371
            ||||||||||||||||  ||||| ||||| |||||||| ||   |||||||||||||||
Sbjct: 578 ggtcttgctccttattcgaatgtagccactgagcttgccgtcatgttgcttctcaatgct 519

                                                                       
Query: 372 gatgttcaccaaagcatcttctccgaacacactcttggcataaagattagcagcaatgta 431
           ||||||||||||||| || || || ||||||||||| |||||||| |||||||||| | |
Sbjct: 518 gatgttcaccaaagcgtcctcgccaaacacactctttgcataaaggttagcagcaaggaa 459

                       
Query: 432 accgcattcccc 443
           ||| ||||||||
Sbjct: 458 accacattcccc 447
to top
>gb|AY109245.1| Zea mays PCO147899 mRNA sequence
          Length = 751

 Score =  133 bits (67), Expect = 5e-28
 Identities = 145/171 (84%)
 Strand = Plus / Minus

                                                                       
Query: 257 tgcctcccttctgcttgagggtaatcttatctcccaagctgagcgcgattccttgtgtct 316
           ||||||||||||| || ||||| ||||| ||||| ||||||||||| |||||||| ||||
Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgcaattccttgggtct 652

                                                                       
Query: 317 tgctccttattctgatgtaaccactaagcttgccatcgatttgcttctcaatgctgatgt 376
           |||| ||||| |||||||| ||| | | ||||||||||   ||||||||||  ||||| |
Sbjct: 651 tgcttcttatcctgatgtagccagtcaacttgccatcggcctgcttctcaacactgatat 592

                                                              
Query: 377 tcaccaaagcatcttctccgaacacactcttggcataaagattagcagcaa 427
           |||||| ||| || || || ||||||||||||||||| ||||| |||||||
Sbjct: 591 tcaccagagcgtcctcgccaaacacactcttggcatagagatttgcagcaa 541
to top
>gb|AC026791.4|AC026791 Homo sapiens chromosome 5 clone CTD-2265D9, complete sequence
          Length = 154318

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 101   tcctcttcttttctcatcattttctttg 128
             |||| |||||||||||||||||||||||
Sbjct: 21122 tccttttcttttctcatcattttctttg 21095
to top
>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds
          Length = 3306

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 307  ccttgtgtcttgctccttattctgatgtaaccact 341
            ||||| |||||||||||||| || |||||||||||
Sbjct: 2910 ccttgcgtcttgctccttatccttatgtaaccact 2876
to top
>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds
          Length = 3296

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 307  ccttgtgtcttgctccttattctgatgtaaccact 341
            ||||| |||||||||||||| || |||||||||||
Sbjct: 2861 ccttgcgtcttgctccttatccttatgtaaccact 2827
to top
>gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, complete sequence
          Length = 160354

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 108   cttttctcatcattttctttgat 130
             |||||||||||||||||||||||
Sbjct: 64635 cttttctcatcattttctttgat 64613
to top
>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence
          Length = 217989

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 103    ctcttcttttctcatcattttct 125
              |||||||||||||||||||||||
Sbjct: 163429 ctcttcttttctcatcattttct 163451
to top
>gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, complete sequence
          Length = 246921

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 103   ctcttcttttctcatcattttct 125
             |||||||||||||||||||||||
Sbjct: 66466 ctcttcttttctcatcattttct 66488
to top
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project)
          Length = 94319

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 86/107 (80%)
 Strand = Plus / Minus

                                                                         
Query: 307   ccttgtgtcttgctccttattctgatgtaaccactaagcttgccatcgatttgcttctca 366
             ||||| |||||||||||||| || ||||||||||| |   | |||||  |||||||||||
Sbjct: 50517 ccttgcgtcttgctccttatccttatgtaaccactcaatgttccatccgtttgcttctca 50458

                                                            
Query: 367   atgctgatgttcaccaaagcatcttctccgaacacactcttggcata 413
             || || |  ||||| | |||||| || || |||||||| || |||||
Sbjct: 50457 atactcaaattcacaagagcatcctcaccaaacacactttttgcata 50411



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 307   ccttgtgtcttgctccttattctgatgtaaccact 341
             ||||| |||||||||||||| || |||||||||||
Sbjct: 45208 ccttgcgtcttgctccttatccttatgtaaccact 45174
to top
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75
          Length = 196242

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 307   ccttgtgtcttgctccttattctgatgtaaccact 341
             ||||| |||||||||||||| || |||||||||||
Sbjct: 38582 ccttgcgtcttgctccttatccttatgtaaccact 38548



 Score = 46.1 bits (23), Expect = 0.098
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 307   ccttgtgtcttgctccttattctgatgtaaccact 341
             ||||| |||||||||||||| || |||||||||||
Sbjct: 33273 ccttgcgtcttgctccttatccttatgtaaccact 33239
to top
>dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, complete cds,
           clone: RAFL09-97-P16
          Length = 1212

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 307 ccttgtgtcttgctccttattctgatgtaaccact 341
           ||||| |||||||||||||| || |||||||||||
Sbjct: 816 ccttgcgtcttgctccttatccttatgtaaccact 782
to top
>gb|AC121353.2| Rattus norvegicus chromosome 1 clone RP32-274I11 map q34, complete
             sequence
          Length = 142440

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   aatgctgatgttcaccaaagc 386
             |||||||||||||||||||||
Sbjct: 96357 aatgctgatgttcaccaaagc 96377
to top
>ref|NM_001016394.2| Xenopus tropicalis hypothetical protein LOC549148 (LOC549148), mRNA
          Length = 1594

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 cttttctcatcattttcttt 127
           ||||||||||||||||||||
Sbjct: 119 cttttctcatcattttcttt 100
to top
>gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete sequence
          Length = 222162

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    cttttctcatcattttcttt 127
              ||||||||||||||||||||
Sbjct: 115684 cttttctcatcattttcttt 115703
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 335     aaccactaagcttgccatcg 354
               ||||||||||||||||||||
Sbjct: 3889983 aaccactaagcttgccatcg 3890002
to top
>ref|XM_721098.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05695)
           partial mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 tgtcttgctccttattctga 331
           ||||||||||||||||||||
Sbjct: 649 tgtcttgctccttattctga 630
to top
>gb|AC089996.12| Homo sapiens 12 BAC RP11-76M15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 107793

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   agggtaatcttatctcccaa 293
             ||||||||||||||||||||
Sbjct: 30187 agggtaatcttatctcccaa 30168
to top
>gb|AC105204.5| Homo sapiens chromosome 15, clone RP11-1087J2, complete sequence
          Length = 210658

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   ttcttttctcatcattttct 125
             ||||||||||||||||||||
Sbjct: 65993 ttcttttctcatcattttct 66012
to top
>gb|AC112724.3| Homo sapiens BAC clone RP11-811L19 from 4, complete sequence
          Length = 42210

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tcttcttttctcatcatttt 123
             ||||||||||||||||||||
Sbjct: 23110 tcttcttttctcatcatttt 23091
to top
>gb|AC079208.4| Homo sapiens chromosome 15, clone RP11-1149K15, complete sequence
          Length = 168252

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   ttcttttctcatcattttct 125
             ||||||||||||||||||||
Sbjct: 34307 ttcttttctcatcattttct 34288
to top
>ref|XM_694569.1| PREDICTED: Danio rerio similar to egf-like module-containing
           mucin-like receptor 3 isoform a (LOC571015), mRNA
          Length = 2205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 attaactgcctcccttctgc 270
           ||||||||||||||||||||
Sbjct: 183 attaactgcctcccttctgc 164
to top
>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   cccttctgcttgagggtaat 281
             ||||||||||||||||||||
Sbjct: 29210 cccttctgcttgagggtaat 29229
to top
>gb|AC020783.8| Homo sapiens chromosome 8, clone RP11-16M2, complete sequence
          Length = 153740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    aatgctgatgttcaccaaag 385
              ||||||||||||||||||||
Sbjct: 144127 aatgctgatgttcaccaaag 144146
to top
>gb|AC013551.10| Homo sapiens chromosome 15, clone RP11-133P13, complete sequence
          Length = 153823

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   ttcttttctcatcattttct 125
             ||||||||||||||||||||
Sbjct: 30254 ttcttttctcatcattttct 30273
to top
>gb|AC150280.2| Pan troglodytes BAC clone CH251-20M5 from chromosome 7, complete
             sequence
          Length = 191966

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ttttctcatcattttctttg 128
             ||||||||||||||||||||
Sbjct: 80407 ttttctcatcattttctttg 80388
to top
>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence
          Length = 89352

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   ctcccttctgcttgagggta 279
             ||||||||||||||||||||
Sbjct: 72452 ctcccttctgcttgagggta 72433
to top
>gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, complete sequence
          Length = 182530

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     agacctatcgtgaaaaggaa 56
              ||||||||||||||||||||
Sbjct: 123743 agacctatcgtgaaaaggaa 123724
to top
>gb|AC147873.3| Monodelphis domestica clone VMRC6-582D4, complete sequence
          Length = 165359

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   cttcttttctcatcattttctttg 128
             ||||| ||||||||||||||||||
Sbjct: 54653 cttctattctcatcattttctttg 54676
to top
>emb|CR761165.2| Xenopus tropicalis finished cDNA, clone TEgg054k06
          Length = 1594

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 cttttctcatcattttcttt 127
           ||||||||||||||||||||
Sbjct: 119 cttttctcatcattttcttt 100
to top
>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence
          Length = 185588

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    cccttctgcttgagggtaat 281
              ||||||||||||||||||||
Sbjct: 134566 cccttctgcttgagggtaat 134585
to top
>gb|AC115876.18| Mus musculus chromosome 1, clone RP24-356G6, complete sequence
          Length = 163698

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ttctcatcattttctttgat 130
            ||||||||||||||||||||
Sbjct: 6082 ttctcatcattttctttgat 6101
to top
>gb|AC125525.3| Mus musculus BAC clone RP24-395H10 from 1, complete sequence
          Length = 195904

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ttctcatcattttctttgat 130
             ||||||||||||||||||||
Sbjct: 12907 ttctcatcattttctttgat 12888
to top
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 105    cttcttttctcatcattttctttg 128
              ||||| ||||||||||||||||||
Sbjct: 883826 cttctattctcatcattttctttg 883849
to top
>emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on chromosome 4, complete
             sequence
          Length = 201142

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   tcttcttttctcatcattttcttt 127
             ||||||||||| ||||||||||||
Sbjct: 47129 tcttcttttcttatcattttcttt 47106
to top
>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene
           region, section 8/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 cccttctgcttgagggtaat 281
           ||||||||||||||||||||
Sbjct: 911 cccttctgcttgagggtaat 892
to top
>dbj|AP001577.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB611H5
          Length = 144828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttcacccatttatcaagaaa 37
             ||||||||||||||||||||
Sbjct: 43968 ttcacccatttatcaagaaa 43949


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,466,057
Number of Sequences: 3902068
Number of extensions: 4466057
Number of successful extensions: 122689
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122502
Number of HSP's gapped (non-prelim): 187
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top