Clone Name | rbastl50c09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 gggaaaaaatcgacgaaaagaggtta 158 |||||||||||||||| ||||||||| Sbjct: 9619407 gggaaaaaatcgacgagaagaggtta 9619432
>dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1015H11 Length = 156897 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 gggaaaaaatcgacgaaaagaggtta 158 |||||||||||||||| ||||||||| Sbjct: 16887 gggaaaaaatcgacgagaagaggtta 16912
>dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0005L24 Length = 155365 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 133 gggaaaaaatcgacgaaaagaggtta 158 |||||||||||||||| ||||||||| Sbjct: 149437 gggaaaaaatcgacgagaagaggtta 149462
>gb|AC111132.7| Mus musculus chromosome 3, clone RP23-340B7, complete sequence Length = 205647 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 agctggggaaggggaaaaga 198 |||||||||||||||||||| Sbjct: 73622 agctggggaaggggaaaaga 73603
>gb|AC148157.1| Homo sapiens chromosome 21 clone XX-181G02-M map q21.3-22.11, complete sequence Length = 210352 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 aagctggggaaggggaaaag 197 |||||||||||||||||||| Sbjct: 186743 aagctggggaaggggaaaag 186762
>ref|XM_548409.2| PREDICTED: Canis familiaris similar to HLA-B associated transcript 2 (LOC491288), mRNA Length = 4431 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 agctggggaaggggaaaaga 198 |||||||||||||||||||| Sbjct: 923 agctggggaaggggaaaaga 904
>emb|AJ720922.1| Gallus gallus mRNA for hypothetical protein, clone 30a15 Length = 2922 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 agaagctggggaaggggaaa 195 |||||||||||||||||||| Sbjct: 1884 agaagctggggaaggggaaa 1903
>gb|AC035249.7|AC035249 Arabidopsis thaliana chromosome 1 BAC F8D11 genomic sequence, complete sequence Length = 109431 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttgtctacatcagtctttag 62 |||||||||||||||||||| Sbjct: 14723 ttgtctacatcagtctttag 14704
>dbj|BS000173.1| Pan troglodytes chromosome 22 clone:PTB-258K22, map 22, partial sequences, complete sequence Length = 46770 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 aagctggggaaggggaaaag 197 |||||||||||||||||||| Sbjct: 32086 aagctggggaaggggaaaag 32105
>dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, section 49/105 Length = 340000 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 aagctggggaaggggaaaag 197 |||||||||||||||||||| Sbjct: 193730 aagctggggaaggggaaaag 193749
>dbj|AP000239.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-32A2, complete sequence Length = 119326 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 aagctggggaaggggaaaag 197 |||||||||||||||||||| Sbjct: 8810 aagctggggaaggggaaaag 8829
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ggaaaaaatcgacgaaaaga 153 |||||||||||||||||||| Sbjct: 1842014 ggaaaaaatcgacgaaaaga 1841995
>gb|AC134828.4| Mus musculus BAC clone RP24-472K15 from 6, complete sequence Length = 163810 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ggggaaggggaaaagaaatc 202 |||||||||||||||||||| Sbjct: 69936 ggggaaggggaaaagaaatc 69955
>ref|NM_001030707.1| Gallus gallus component of oligomeric golgi complex 1 (COG1), mRNA Length = 2922 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 agaagctggggaaggggaaa 195 |||||||||||||||||||| Sbjct: 1884 agaagctggggaaggggaaa 1903
>dbj|AP000199.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B355D16-T1073, segment 5/8, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 aagctggggaaggggaaaag 197 |||||||||||||||||||| Sbjct: 84261 aagctggggaaggggaaaag 84242
>dbj|AP000095.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, B335D16-P10G11 region, segment 5/7 Length = 100000 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 aagctggggaaggggaaaag 197 |||||||||||||||||||| Sbjct: 84261 aagctggggaaggggaaaag 84242 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,250,799 Number of Sequences: 3902068 Number of extensions: 2250799 Number of successful extensions: 178884 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 178772 Number of HSP's gapped (non-prelim): 112 length of query: 205 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 183 effective length of database: 17,147,199,772 effective search space: 3137937558276 effective search space used: 3137937558276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)