ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
2dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
3dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
4gb|AC111132.7| Mus musculus chromosome 3, clone RP23-340B7, comp... 40 2.6
5gb|AC148157.1| Homo sapiens chromosome 21 clone XX-181G02-M map ... 40 2.6
6ref|XM_548409.2| PREDICTED: Canis familiaris similar to HLA-B as... 40 2.6
7emb|AJ720922.1| Gallus gallus mRNA for hypothetical protein, clo... 40 2.6
8gb|AC035249.7|AC035249 Arabidopsis thaliana chromosome 1 BAC F8D... 40 2.6
9dbj|BS000173.1| Pan troglodytes chromosome 22 clone:PTB-258K22, ... 40 2.6
10dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 2.6
11dbj|AP000239.2| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 2.6
12gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 2.6
13gb|AC134828.4| Mus musculus BAC clone RP24-472K15 from 6, comple... 40 2.6
14ref|NM_001030707.1| Gallus gallus component of oligomeric golgi ... 40 2.6
15dbj|AP000199.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 2.6
16dbj|AP000095.1| Homo sapiens genomic DNA of 21q22.1, GART and AM... 40 2.6

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 133     gggaaaaaatcgacgaaaagaggtta 158
               |||||||||||||||| |||||||||
Sbjct: 9619407 gggaaaaaatcgacgagaagaggtta 9619432



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>dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1015H11
          Length = 156897

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 133   gggaaaaaatcgacgaaaagaggtta 158
             |||||||||||||||| |||||||||
Sbjct: 16887 gggaaaaaatcgacgagaagaggtta 16912



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>dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0005L24
          Length = 155365

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 133    gggaaaaaatcgacgaaaagaggtta 158
              |||||||||||||||| |||||||||
Sbjct: 149437 gggaaaaaatcgacgagaagaggtta 149462



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>gb|AC111132.7| Mus musculus chromosome 3, clone RP23-340B7, complete sequence
          Length = 205647

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   agctggggaaggggaaaaga 198
             ||||||||||||||||||||
Sbjct: 73622 agctggggaaggggaaaaga 73603



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>gb|AC148157.1| Homo sapiens chromosome 21 clone XX-181G02-M map q21.3-22.11, complete
              sequence
          Length = 210352

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    aagctggggaaggggaaaag 197
              ||||||||||||||||||||
Sbjct: 186743 aagctggggaaggggaaaag 186762



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>ref|XM_548409.2| PREDICTED: Canis familiaris similar to HLA-B associated transcript
           2 (LOC491288), mRNA
          Length = 4431

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 179 agctggggaaggggaaaaga 198
           ||||||||||||||||||||
Sbjct: 923 agctggggaaggggaaaaga 904



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>emb|AJ720922.1| Gallus gallus mRNA for hypothetical protein, clone 30a15
          Length = 2922

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  agaagctggggaaggggaaa 195
            ||||||||||||||||||||
Sbjct: 1884 agaagctggggaaggggaaa 1903



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>gb|AC035249.7|AC035249 Arabidopsis thaliana chromosome 1 BAC F8D11 genomic sequence, complete
             sequence
          Length = 109431

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    ttgtctacatcagtctttag 62
             ||||||||||||||||||||
Sbjct: 14723 ttgtctacatcagtctttag 14704



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>dbj|BS000173.1| Pan troglodytes chromosome 22 clone:PTB-258K22, map 22, partial
             sequences, complete sequence
          Length = 46770

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   aagctggggaaggggaaaag 197
             ||||||||||||||||||||
Sbjct: 32086 aagctggggaaggggaaaag 32105



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>dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, section 49/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    aagctggggaaggggaaaag 197
              ||||||||||||||||||||
Sbjct: 193730 aagctggggaaggggaaaag 193749



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>dbj|AP000239.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-32A2, complete
            sequence
          Length = 119326

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 178  aagctggggaaggggaaaag 197
            ||||||||||||||||||||
Sbjct: 8810 aagctggggaaggggaaaag 8829



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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 134     ggaaaaaatcgacgaaaaga 153
               ||||||||||||||||||||
Sbjct: 1842014 ggaaaaaatcgacgaaaaga 1841995



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>gb|AC134828.4| Mus musculus BAC clone RP24-472K15 from 6, complete sequence
          Length = 163810

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   ggggaaggggaaaagaaatc 202
             ||||||||||||||||||||
Sbjct: 69936 ggggaaggggaaaagaaatc 69955



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>ref|NM_001030707.1| Gallus gallus component of oligomeric golgi complex 1 (COG1), mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  agaagctggggaaggggaaa 195
            ||||||||||||||||||||
Sbjct: 1884 agaagctggggaaggggaaa 1903



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>dbj|AP000199.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B355D16-T1073, segment 5/8, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   aagctggggaaggggaaaag 197
             ||||||||||||||||||||
Sbjct: 84261 aagctggggaaggggaaaag 84242



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>dbj|AP000095.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             B335D16-P10G11 region, segment 5/7
          Length = 100000

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   aagctggggaaggggaaaag 197
             ||||||||||||||||||||
Sbjct: 84261 aagctggggaaggggaaaag 84242


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,250,799
Number of Sequences: 3902068
Number of extensions: 2250799
Number of successful extensions: 178884
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 178772
Number of HSP's gapped (non-prelim): 112
length of query: 205
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 183
effective length of database: 17,147,199,772
effective search space: 3137937558276
effective search space used: 3137937558276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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