Clone Name | rbastl50c07 |
---|---|
Clone Library Name | barley_pub |
>NU1M_PECMA (Q96186) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 354 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/41 (34%), Positives = 26/41 (63%) Frame = -1 Query: 423 FFSFVLPIMPTLSRSQMPSFQGICLVSRVFCQRMMSLLVSC 301 FFSF++ + L RS P ++ L+ ++CQ ++ +L+SC Sbjct: 307 FFSFMVVFLIVLCRSSFPRYRYDMLMKLIWCQ-ILPILMSC 346
>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A| precursor Length = 928 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 278 NQKPASWTHDTKRLIIL*QKTLETKQMPWNDGIWLLDNVGIIGSTKL 418 N A+WT+DT KT+ET ND +W G+I S +L Sbjct: 378 NYSQATWTYDTT-------KTIETHLFKRNDFLWHYTEPGLIHSIQL 417
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 30.0 bits (66), Expect = 2.8 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -2 Query: 65 AVIRHGKWYICWMLLATSTVG 3 AV+ G W +CWM+LA+S G Sbjct: 132 AVMTSGGWRVCWMILASSWFG 152
>PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101| Length = 621 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +2 Query: 71 PPGITTHTD--NVDNMLGQYQYTLWEKENSST 160 PP T D +DN+LGQ Q T++E N +T Sbjct: 314 PPNARTQKDLVQIDNLLGQMQDTIYENANHAT 345
>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] (Fragment) Length = 313 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +2 Query: 266 YTWMNQKPASWTHDTKRLIIL*QKTLETKQMPWND 370 Y W NQ P+S++ ++I L + T Q W+D Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260
>BPAEB_MOUSE (Q60824) Bullous pemphigoid antigen 1, isoforms 6/7 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragments) Length = 1678 Score = 29.3 bits (64), Expect = 4.7 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 262 SLHMDEPETSFMDT*HQETHHPLTKNPGNQANALERRHLAPRQCWHYRQHKAE 420 S D S DT +E HHP +PGN + L + P W H+ E Sbjct: 900 STTQDHTFASAFDTAGRECHHPAEISPGNSGH-LNLKTRLPLSRWTQEPHQTE 951
>BPAEA_MOUSE (Q91ZU8) Bullous pemphigoid antigen 1, isoform 5 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 2611 Score = 29.3 bits (64), Expect = 4.7 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 262 SLHMDEPETSFMDT*HQETHHPLTKNPGNQANALERRHLAPRQCWHYRQHKAE 420 S D S DT +E HHP +PGN + L + P W H+ E Sbjct: 1833 STTQDHTFASAFDTAGRECHHPAEISPGNSGH-LNLKTRLPLSRWTQEPHQTE 1884
>CHLI_CYACA (Q9TLX7) Magnesium-chelatase subunit chlI (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase) Length = 353 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = -3 Query: 175 GILCACGRVLFFPESVLVLAEHVVNIVCVCCYSRWSLL 62 G+L R L + + + +L +H+V+++ C S W+L+ Sbjct: 142 GLLAKANRGLLYVDEINLLDDHLVDVLLDCSASGWNLV 179
>HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA| Length = 386 Score = 28.9 bits (63), Expect = 6.2 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Frame = +1 Query: 1 RPTVDVANNIQQIYHFP---CRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTK 171 RPT + N + I+ P C + N T PV +L +E+F T T Sbjct: 278 RPTAFIGNELSDIFRTPNPQCAVITIPYYMNRTPLGAFGVLGPV---NLPYKEIFKTLTI 334 Query: 172 FQTKIDRYSTKFMFLLYDLIWRPSSSHPTIS 264 F KI T+ + RP S PT+S Sbjct: 335 FADKIKASLTQSFYKFKLSFRRPCPSDPTLS 365
>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 702 Score = 28.5 bits (62), Expect = 8.1 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -2 Query: 197 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 51 EY + +V + FVC KS P C+ +GRA H VL+F SA RH Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -2 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,369,761 Number of Sequences: 219361 Number of extensions: 1701618 Number of successful extensions: 4744 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4741 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)