Clone Name | rbastl50c07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK120981.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042B20, full insert sequence Length = 3625 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 376 ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 435 ||||||||||||||||||||| ||| || || |||||||| |||| ||||||| ||||| Sbjct: 3089 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 3030 Query: 436 ttgc 439 |||| Sbjct: 3029 ttgc 3026
>dbj|AK105595.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-129-B02, full insert sequence Length = 2173 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 376 ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 435 ||||||||||||||||||||| ||| || || |||||||| |||| ||||||| ||||| Sbjct: 1637 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 1578 Query: 436 ttgc 439 |||| Sbjct: 1577 ttgc 1574
>dbj|AK100704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114P05, full insert sequence Length = 3625 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 376 ttggctcctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgt 435 ||||||||||||||||||||| ||| || || |||||||| |||| ||||||| ||||| Sbjct: 3089 ttggctcctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgt 3030 Query: 436 ttgc 439 |||| Sbjct: 3029 ttgc 3026
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 382 cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgc 439 ||||||||||||||| ||| || || |||||||| |||| ||||||| ||||||||| Sbjct: 7478736 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgc 7478793
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 382 cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgc 439 ||||||||||||||| ||| || || |||||||| |||| ||||||| ||||||||| Sbjct: 139764 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgc 139821
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 382 cctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgc 439 ||||||||||||||| ||| || || |||||||| |||| ||||||| ||||||||| Sbjct: 27528 cctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgc 27585
>ref|NM_188661.1| Oryza sativa (japonica cultivar-group), Ozsa8264 predicted mRNA Length = 2952 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 383 ctagacaatgttggcattataggcagcacaaagctgaagaagagcgtttttgtttgc 439 |||||||||||||| ||| || || |||||||| |||| ||||||| ||||||||| Sbjct: 2952 ctagacaatgttggtattgtaagctgcacaaagttgaataagagcgcctttgtttgc 2896
>gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, complete sequence Length = 149787 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 333 aaaaaaccctggaaaccaagcaaatg 358 |||||||||||||||| ||||||||| Sbjct: 69735 aaaaaaccctggaaacaaagcaaatg 69760
>ref|XM_473065.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2136 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 actcatcatcctctgacaaaa 336 ||||||||||||||||||||| Sbjct: 561 actcatcatcctctgacaaaa 541
>emb|AL356513.15| Human DNA sequence from clone RP11-108A15 on chromosome X Contains the 3' end of a novel gene similar to Chic1 (LOC349423)and a selenophosphate synthetase (SPS) pseudogene, complete sequence Length = 180619 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 acatggatgaaccagaaacca 289 ||||||||||||||||||||| Sbjct: 44477 acatggatgaaccagaaacca 44457
>gb|AC023725.5| Drosophila melanogaster X BAC RP98-9I10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165928 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cacacgcacacaaaattccaa 177 ||||||||||||||||||||| Sbjct: 109827 cacacgcacacaaaattccaa 109847
>gb|AC105352.2| Drosophila melanogaster X BAC RP98-45O17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172784 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cacacgcacacaaaattccaa 177 ||||||||||||||||||||| Sbjct: 144837 cacacgcacacaaaattccaa 144857
>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181831 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 cacacgcacacaaaattccaa 177 ||||||||||||||||||||| Sbjct: 159030 cacacgcacacaaaattccaa 159010
>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence Length = 166104 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 243 ttcttcccatcccaccatcagccta 267 ||||||||||||||||||| ||||| Sbjct: 79289 ttcttcccatcccaccatctgccta 79313
>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence Length = 174210 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 cacacagacaatgttgacaac 109 ||||||||||||||||||||| Sbjct: 137629 cacacagacaatgttgacaac 137609
>gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162572 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 cttcttcttcccatcccacca 259 ||||||||||||||||||||| Sbjct: 123899 cttcttcttcccatcccacca 123879
>gb|AC010175.4| Homo sapiens 12 BAC RP11-118B22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127277 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 cttcttcttcccatcccacca 259 ||||||||||||||||||||| Sbjct: 110895 cttcttcttcccatcccacca 110915
>dbj|AK103837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148G19, full insert sequence Length = 2585 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 actcatcatcctctgacaaaa 336 ||||||||||||||||||||| Sbjct: 655 actcatcatcctctgacaaaa 635
>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete sequence Length = 326403 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 cacacgcacacaaaattccaa 177 ||||||||||||||||||||| Sbjct: 319584 cacacgcacacaaaattccaa 319564
>ref|NM_001030824.1| Gallus gallus WW domain binding protein 4 (formin binding protein 21) (WBP4), mRNA Length = 4867 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gaagaagagcgtttttgttt 437 |||||||||||||||||||| Sbjct: 4091 gaagaagagcgtttttgttt 4110
>gb|AC117187.3| Mus musculus BAC clone RP23-41M4 from 1, complete sequence Length = 138404 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 agacagatactccacaaagt 205 |||||||||||||||||||| Sbjct: 98671 agacagatactccacaaagt 98652
>gb|AC125048.2| Mus musculus BAC clone RP23-364E18 from 5, complete sequence Length = 190505 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 cacacaaaattccaaaccaaaata 186 |||||||||||| ||||||||||| Sbjct: 28219 cacacaaaattcaaaaccaaaata 28242
>ref|XM_847720.1| PREDICTED: Canis familiaris similar to centromere protein F (350/400kD) (LOC610263), mRNA Length = 4350 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 agaaaccagcttcatggaca 301 |||||||||||||||||||| Sbjct: 2326 agaaaccagcttcatggaca 2345
>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete sequence Length = 22695 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 aaaaaaccctggaaaccaagcaaatgcc 360 ||||| |||||||||||||||| ||||| Sbjct: 15400 aaaaatccctggaaaccaagcagatgcc 15373
>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5' end of a novel gene, two novel genes, the Taok1 gene for TAO kinase 1, a eukaryotic translation initiation factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2 (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1 and two CpG islands, complete sequence Length = 220230 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 ataacaacacacacagacaa 99 |||||||||||||||||||| Sbjct: 65918 ataacaacacacacagacaa 65937
>emb|AJ851443.1| Gallus gallus mRNA for hypothetical protein, clone 3a20 Length = 4867 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gaagaagagcgtttttgttt 437 |||||||||||||||||||| Sbjct: 4091 gaagaagagcgtttttgttt 4110
>gb|AC095036.2| Homo sapiens chromosome 1 clone RP11-320E2, complete sequence Length = 191499 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ctgctatatgatttgatttg 233 |||||||||||||||||||| Sbjct: 187456 ctgctatatgatttgatttg 187437
>gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, complete sequence Length = 165566 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 acaaaaaaccctggaaacca 350 |||||||||||||||||||| Sbjct: 115422 acaaaaaaccctggaaacca 115441
>gb|AC074138.5| Homo sapiens chromosome 19 clone CTD-3234P18, complete sequence Length = 200418 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 acaaaaaaccctggaaacca 350 |||||||||||||||||||| Sbjct: 22691 acaaaaaaccctggaaacca 22710
>gb|AC068945.7| Homo sapiens BAC clone RP11-789C1 from 4, complete sequence Length = 219476 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cagcttcatggacacatgac 307 |||||||||||||||||||| Sbjct: 114792 cagcttcatggacacatgac 114773
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cacacaaaattccaaaccaaaata 186 ||||||||| |||||||||||||| Sbjct: 5782574 cacacaaaaatccaaaccaaaata 5782551
>gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete sequence Length = 178624 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 acaaaaaaccctggaaacca 350 |||||||||||||||||||| Sbjct: 120867 acaaaaaaccctggaaacca 120886
>emb|AL672214.8| Mouse DNA sequence from clone RP23-161C9 on chromosome X, complete sequence Length = 47355 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gctatatgatttgatttggc 235 |||||||||||||||||||| Sbjct: 15902 gctatatgatttgatttggc 15921
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cacacaaaattccaaaccaaaata 186 ||||||||| |||||||||||||| Sbjct: 12376 cacacaaaaatccaaaccaaaata 12353
>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1135_F06 Length = 102230 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 cacacaaaattccaaaccaaaata 186 ||||||||| |||||||||||||| Sbjct: 72088 cacacaaaaatccaaaccaaaata 72065
>emb|AL929019.4| Zebrafish DNA sequence from clone CH211-149L13, complete sequence Length = 149316 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 aataacaacacacacagaca 98 |||||||||||||||||||| Sbjct: 5092 aataacaacacacacagaca 5073
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 atggatgaaccagaaaccag 290 |||||||||||||||||||| Sbjct: 328902 atggatgaaccagaaaccag 328883
>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence Length = 180436 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 ccaccatcagcctacacatg 273 |||||||||||||||||||| Sbjct: 107879 ccaccatcagcctacacatg 107898
>gb|AC142100.3| Mus musculus BAC clone RP24-366C18 from 18, complete sequence Length = 175110 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 agaactcttccacacgcaca 166 |||||||||||||||||||| Sbjct: 82753 agaactcttccacacgcaca 82772
>emb|CR407703.23| Zebrafish DNA sequence from clone CH211-141H12 in linkage group 9, complete sequence Length = 150766 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aataacaacacacacagaca 98 |||||||||||||||||||| Sbjct: 94620 aataacaacacacacagaca 94639 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,649,621 Number of Sequences: 3902068 Number of extensions: 5649621 Number of successful extensions: 108400 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108292 Number of HSP's gapped (non-prelim): 108 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)