>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)|
          Length = 942

 Score =  144 bits (363), Expect = 1e-34
 Identities = 69/95 (72%), Positives = 80/95 (84%)
 Frame = -3

Query: 450  EAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAA 271
            EAV+ALAKSKA ELEDF++ P  S +  DEVGSKRKRVFSPDD+TRGAARARL LE+FAA
Sbjct: 847  EAVVALAKSKAAELEDFSTTPTFSDDLKDEVGSKRKRVFSPDDITRGAARARLFLEEFAA 906

Query: 270  LPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQF 166
            LP+DE+DGSK  EM  K+K+D +KDAA NPWL QF
Sbjct: 907  LPMDEMDGSKILEMATKMKADLQKDAADNPWLQQF 941

>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)|
          Length = 937

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 42/96 (43%), Positives = 65/96 (67%)
 Frame = -3

Query: 450  EAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAA 271
            E+V+ALA+ KA ELEDF+ +  +    ++E G ++ R   PD+V+RGA RA   L++FAA
Sbjct: 844  ESVVALAREKAAELEDFSPSSMIIN--NEESGKRKSREDDPDEVSRGAERAHKFLKEFAA 901

Query: 270  LPLDEVDGSKATEMVAKLKSDFEKDAASNPWLHQFL 163
            +PLD+++   + + V ++K + EKDAA   WL QFL
Sbjct: 902  IPLDKMELKDSLQRVREMKDELEKDAADCHWLRQFL 937

>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2|
          Length = 937

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = -3

Query: 450  EAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAA 271
            + V+ +AK KA+ELEDFTS      +  +E G      +S  DV  G+A    LL+D   
Sbjct: 846  DKVVRMAKRKADELEDFTS------KHEEENGGGLGVQYSKQDVEEGSA----LLKDVLV 895

Query: 270  LPLDEVDGSKAT--EMVAKLKSDFEKD 196
               DEV   + +  EMVA+LK   +KD
Sbjct: 896  KWKDEVKSGRMSKEEMVARLKELVQKD 922

>YNCA_CAEEL (P34544) Hypothetical protein R05D3.11 in chromosome III|
          Length = 1327

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 402 FTSAPNLSGEPSDEVGSKRKRVFS 331
           + SAP + GEP  EV S++K VFS
Sbjct: 553 YVSAPTMPGEPGYEVASEKKSVFS 576

>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
            light chain LC1]
          Length = 2468

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 25/90 (27%), Positives = 41/90 (45%)
 Frame = -3

Query: 450  EAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAA 271
            EAV A   + A       +A   +  P+ E+ ++R  + SP+D+T+          DF  
Sbjct: 793  EAVAAAVGTGATTAAVMAAAGIAAIGPAKELEAERSLMSSPEDLTK----------DFEE 842

Query: 270  LPLDEVDGSKATEMVAKLKSDFEKDAASNP 181
            L  +EVD +K  +   +L  D EK   + P
Sbjct: 843  LKAEEVDVTKDIKPQLELIEDEEKLKETEP 872

>YDM6_SCHPO (P87137) Hypothetical protein C57A7.06 in chromosome I|
          Length = 929

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
 Frame = -3

Query: 408 EDFTSAPNLSGEPSDEVGSKR-KRVFSPDDVTRGAA---RARLLLEDFAALPLDEVD--- 250
           ED TS     G P   +G+   +R F P +     +   R    + D A L +++ +   
Sbjct: 617 EDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKE 676

Query: 249 GSKATEMVAKLKSDFEKDAASNPWL 175
           G K  E   K +S  E    +NPWL
Sbjct: 677 GQKKAEARKKKESPLEATEETNPWL 701

>SRP19_MOUSE (Q9D7A6) Signal recognition particle 19 kDa protein (SRP19)|
          Length = 144

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = -3

Query: 438 ALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLD 259
           A+    A E++D  SA  L+     E      R ++ D   RG  R +L  ED  +L L 
Sbjct: 40  AVENPTATEIQDVCSAVGLNAFL--EKNKMYSREWNRDVQFRGRVRVQLKQED-GSLCLV 96

Query: 258 EVDGSKAT-----EMVAKLKSDFEKDAASNPWLHQ 169
           +    K+      EM+ KLK+  +K   ++P L Q
Sbjct: 97  QFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQ 131

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = +2

Query: 188 LAASFSKSDFSLATISVALLPSTSSRGXXXXXXXXXXXXXXPLVTSSGLNTLLRFDPTSS 367
           L A+ S    SLA + VA +  T   G              P V++S          TSS
Sbjct: 92  LTAASSAVTVSLAAV-VAAVAETGGAGAGGAGTAVTASGAGPCVSTSSTTAAAATSSTSS 150

Query: 368 LGSPLKLGALVKSSNSSA 421
           L S     +   SS SSA
Sbjct: 151 LSSSSSSSSSTSSSTSSA 168

>RFCL_METTH (O26342) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit) (mthRFC large subunit)
          Length = 479

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 33  QKDLVENLVDNRFCLLALRKGKDRPKLTRSNRRISDPSLSIPFRGTGVARDY 188
           +KD   NL D    + A+ K +D  K+  + R   DP+L + F    V R+Y
Sbjct: 220 EKDATSNLFD---AVRAVLKSRDVSKVREAMRVDDDPTLVLEFIAENVPREY 268

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +2

Query: 191 AASFSKSDFSLATISVALLPSTSSRGXXXXXXXXXXXXXXPLVTSSGLNTLLRFDPTSS- 367
           + S S S  S ++ S +  PS+ S                P +TSS   TL    P+S+ 
Sbjct: 258 STSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSS-PTLASTSPSSTS 316

Query: 368 -----LGSPLKLGALVKSSNSSALLFA 433
                  S   LG+ + SS++S  L++
Sbjct: 317 ISSTFTDSTSSLGSSIASSSTSVSLYS 343

>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)|
           [Contains: MAP1 light chain LC1]
          Length = 2459

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 372 PSDEVGSKRKRVFSPDDVTRGAARARLLLEDFAALPLDEVDGSKATEMVAKLKSDFEKDA 193
           P+ E+ ++R  + SP+D+T+          DF  L  +E+D +K  +   +L  D EK  
Sbjct: 811 PAKELEAERSLMSSPEDLTK----------DFEELKAEEIDVAKDIKPQLELIEDEEKLK 860

Query: 192 ASNP 181
            + P
Sbjct: 861 ETEP 864


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,088,632
Number of Sequences: 219361
Number of extensions: 1007421
Number of successful extensions: 2628
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2625
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)