ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 68 5e-09
2dbj|AK103275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 5e-09
3dbj|AK066962.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 5e-09
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 68 5e-09
5emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa... 68 5e-09
6gb|AC092800.2| Homo sapiens chromosome 1 clone RP11-25B7, comple... 42 0.26
7emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene 42 0.26
8emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BA... 40 1.0
9gb|AC100825.2| Homo sapiens chromosome 15, clone RP11-1152M12, c... 40 1.0
10gb|AC021553.14| Homo sapiens chromosome 15, clone RP11-709B3, co... 40 1.0
11gb|AY084128.1| Drosophila melanogaster RE20756 full insert cDNA 40 1.0
12gb|AC008651.7|AC008651 Homo sapiens chromosome 5 clone CTB-187A7... 40 1.0
13gb|AC126767.2| Homo sapiens chromosome 5 clone RP11-249M12, comp... 40 1.0
14ref|XM_871589.1| PREDICTED: Bos taurus sialyltransferase 4A (bet... 38 4.1
15ref|XM_614744.2| PREDICTED: Bos taurus sialyltransferase 4A (bet... 38 4.1
16gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromo... 38 4.1
17emb|AL358253.16| Human DNA sequence from clone RP11-460G22 on ch... 38 4.1
18emb|AL356752.13| Human DNA sequence from clone RP11-73M11 on chr... 38 4.1
19emb|AL353582.16| Human DNA sequence from clone CTD-2190D5 on chr... 38 4.1
20emb|AL139420.13| Human DNA sequence from clone RP4-712E4 on chro... 38 4.1
21emb|Z70678.1|SCXV55KB S.cerevisiae chromosome XV DNA, 54.7 kb re... 38 4.1
22gb|AF380123.1| Hydromys chrysogaster microsatellite W4B9 sequence 38 4.1
23ref|XM_939048.1| PREDICTED: Homo sapiens OTU domain containing 3... 38 4.1
24ref|XM_375697.3| PREDICTED: Homo sapiens OTU domain containing 3... 38 4.1
25gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromo... 38 4.1
26gb|AF272737.1|AF272737 Streptomyces griseus strain IFO13350 caro... 38 4.1
27gb|AC009232.3| Homo sapiens BAC clone RP11-352J11 from 2, comple... 38 4.1
28dbj|AB007928.2| Homo sapiens mRNA for KIAA0459 protein, partial cds 38 4.1
29emb|Z64903.1|HS177C2R H.sapiens CpG island DNA genomic Mse1 frag... 38 4.1
30emb|Z74979.1|SCYOR071C S.cerevisiae chromosome XV reading frame ... 38 4.1
31emb|AL831752.7| Mouse DNA sequence from clone RP23-414J22 on chr... 38 4.1
32emb|AJ305086.1|BTA305086 Bos taurus partial mRNA for putative al... 38 4.1

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                            
Query: 6        ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65
                |||||||||| || |||||| || ||||| ||||||||||| || |  ||||||||||| 
Sbjct: 21527829 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 21527888

                                          
Query: 66       accttactttgctcctgccccaggca 91
                ||||| || |||||||| ||||||||
Sbjct: 21527889 accttgctctgctcctggcccaggca 21527914



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>dbj|AK103275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124K10, full
            insert sequence
          Length = 1437

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 6    ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65
            |||||||||| || |||||| || ||||| ||||||||||| || |  ||||||||||| 
Sbjct: 1244 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 1185

                                      
Query: 66   accttactttgctcctgccccaggca 91
            ||||| || |||||||| ||||||||
Sbjct: 1184 accttgctctgctcctggcccaggca 1159



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>dbj|AK066962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091G19, full
            insert sequence
          Length = 3099

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 6    ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65
            |||||||||| || |||||| || ||||| ||||||||||| || |  ||||||||||| 
Sbjct: 2868 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 2809

                                      
Query: 66   accttactttgctcctgccccaggca 91
            ||||| || |||||||| ||||||||
Sbjct: 2808 accttgctctgctcctggcccaggca 2783



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                            
Query: 6        ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65
                |||||||||| || |||||| || ||||| ||||||||||| || |  ||||||||||| 
Sbjct: 21456150 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 21456209

                                          
Query: 66       accttactttgctcctgccccaggca 91
                ||||| || |||||||| ||||||||
Sbjct: 21456210 accttgctctgctcctggcccaggca 21456235



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>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158019

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                          
Query: 6      ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65
              |||||||||| || |||||| || ||||| ||||||||||| || |  ||||||||||| 
Sbjct: 118060 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 118001

                                        
Query: 66     accttactttgctcctgccccaggca 91
              ||||| || |||||||| ||||||||
Sbjct: 118000 accttgctctgctcctggcccaggca 117975



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>gb|AC092800.2| Homo sapiens chromosome 1 clone RP11-25B7, complete sequence
          Length = 169405

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     ttgctcctgccccaggcacac 94
              |||||||||||||||||||||
Sbjct: 164133 ttgctcctgccccaggcacac 164153



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>emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene
          Length = 200033

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 74    ttgctcctgccccaggcacac 94
             |||||||||||||||||||||
Sbjct: 69211 ttgctcctgccccaggcacac 69191



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>emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BAC contig B18D24
          Length = 157180

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    agctctgccagccttgcact 55
             ||||||||||||||||||||
Sbjct: 73744 agctctgccagccttgcact 73763



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>gb|AC100825.2| Homo sapiens chromosome 15, clone RP11-1152M12, complete sequence
          Length = 127680

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    ccttgcactcagcttctcaa 66
             ||||||||||||||||||||
Sbjct: 23066 ccttgcactcagcttctcaa 23085



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>gb|AC021553.14| Homo sapiens chromosome 15, clone RP11-709B3, complete sequence
          Length = 185596

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     ccttgcactcagcttctcaa 66
              ||||||||||||||||||||
Sbjct: 182056 ccttgcactcagcttctcaa 182075



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>gb|AY084128.1| Drosophila melanogaster RE20756 full insert cDNA
          Length = 1378

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ttactttgctcctgccccag 88
           ||||||||||||||||||||
Sbjct: 697 ttactttgctcctgccccag 716



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>gb|AC008651.7|AC008651 Homo sapiens chromosome 5 clone CTB-187A7, complete sequence
          Length = 147098

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    cagcagggggtccacgtcct 30
             ||||||||||||||||||||
Sbjct: 40882 cagcagggggtccacgtcct 40863



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>gb|AC126767.2| Homo sapiens chromosome 5 clone RP11-249M12, complete sequence
          Length = 172289

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    cagcagggggtccacgtcct 30
             ||||||||||||||||||||
Sbjct: 10241 cagcagggggtccacgtcct 10222



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>ref|XM_871589.1| PREDICTED: Bos taurus sialyltransferase 4A (beta-galactosidase
           alpha-2,3-sialytransferase), transcript variant 2
           (SIAT4A), mRNA
          Length = 1770

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  cagcagggggtccacgtcc 29
           |||||||||||||||||||
Sbjct: 401 cagcagggggtccacgtcc 383



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>ref|XM_614744.2| PREDICTED: Bos taurus sialyltransferase 4A (beta-galactosidase
           alpha-2,3-sialytransferase), transcript variant 1
           (SIAT4A), mRNA
          Length = 1689

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  cagcagggggtccacgtcc 29
           |||||||||||||||||||
Sbjct: 401 cagcagggggtccacgtcc 383



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>gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromosome unknown, complete
              sequence
          Length = 169508

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 41     tgccagccttgcactcagcttct 63
              |||||||||||||||| ||||||
Sbjct: 152726 tgccagccttgcactctgcttct 152748



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>emb|AL358253.16| Human DNA sequence from clone RP11-460G22 on chromosome 1 Contains
            the 3' end of the gene for a novel protein (KIAA0459),
            the PLA2G2E gene for phospholipase A2 group IIE and the
            PLA2G2A gene for phospholipase A2 group IIA (platelets,
            synovial fluid), complete sequence
          Length = 101824

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 60   ttctcaaccttactttgctcctg 82
            ||||||||| |||||||||||||
Sbjct: 4049 ttctcaaccatactttgctcctg 4027



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>emb|AL356752.13| Human DNA sequence from clone RP11-73M11 on chromosome 13 Contains part
              of the ATP11A gene for ATPase Class VI type 11A (ATPIH
              ATPIS KIAA1021), a novel gene and four CpG islands,
              complete sequence
          Length = 143517

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 41     tgccagccttgcactcagcttct 63
              |||||||||||||||| ||||||
Sbjct: 104640 tgccagccttgcactctgcttct 104662



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>emb|AL353582.16| Human DNA sequence from clone CTD-2190D5 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 115551

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 75    tgctcctgccccaggcaca 93
             |||||||||||||||||||
Sbjct: 63041 tgctcctgccccaggcaca 63059



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>emb|AL139420.13| Human DNA sequence from clone RP4-712E4 on chromosome 1p11.1-13.2
             Contains the 5' end of the TBX15 gene for T-box 15, a
             novel gene, the 3' end of the WARS2 gene for tryptophanyl
             tRNA synthetase 2 (mitochondrial), the 3' end of  a novel
             gene and a CpG island, complete sequence
          Length = 122122

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ccacgtcctcaccgagctc 40
             |||||||||||||||||||
Sbjct: 61012 ccacgtcctcaccgagctc 61030



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>emb|Z70678.1|SCXV55KB S.cerevisiae chromosome XV DNA, 54.7 kb region
          Length = 54719

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 21    tccacgtcctcaccgagctctgc 43
             ||||||||||||||| |||||||
Sbjct: 37570 tccacgtcctcaccgcgctctgc 37548



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>gb|AF380123.1| Hydromys chrysogaster microsatellite W4B9 sequence
          Length = 376

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 43 ccagccttgcactcagcttctca 65
          ||||||||||| |||||||||||
Sbjct: 13 ccagccttgcattcagcttctca 35



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>ref|XM_939048.1| PREDICTED: Homo sapiens OTU domain containing 3 (OTUD3), mRNA
          Length = 6615

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 60   ttctcaaccttactttgctcctg 82
            ||||||||| |||||||||||||
Sbjct: 4273 ttctcaaccatactttgctcctg 4251



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>ref|XM_375697.3| PREDICTED: Homo sapiens OTU domain containing 3 (OTUD3), mRNA
          Length = 6615

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 60   ttctcaaccttactttgctcctg 82
            ||||||||| |||||||||||||
Sbjct: 4273 ttctcaaccatactttgctcctg 4251



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>gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromosome unknown, complete
             sequence
          Length = 218767

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 41    tgccagccttgcactcagcttct 63
             |||||||||||||||| ||||||
Sbjct: 44102 tgccagccttgcactctgcttct 44080



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>gb|AF272737.1|AF272737 Streptomyces griseus strain IFO13350 carotinoid biosynthesis gene
            cluster, complete sequence
          Length = 10878

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 18   gggtccacgtcctcaccga 36
            |||||||||||||||||||
Sbjct: 5714 gggtccacgtcctcaccga 5696



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>gb|AC009232.3| Homo sapiens BAC clone RP11-352J11 from 2, complete sequence
          Length = 139885

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    tgccagccttgcactcagc 59
             |||||||||||||||||||
Sbjct: 33711 tgccagccttgcactcagc 33729



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>dbj|AB007928.2| Homo sapiens mRNA for KIAA0459 protein, partial cds
          Length = 6490

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 60   ttctcaaccttactttgctcctg 82
            ||||||||| |||||||||||||
Sbjct: 4145 ttctcaaccatactttgctcctg 4123



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>emb|Z64903.1|HS177C2R H.sapiens CpG island DNA genomic Mse1 fragment, clone 177c2,
           reverse read cpg177c2.rt1c
          Length = 305

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  ccacgtcctcaccgagctc 40
           |||||||||||||||||||
Sbjct: 201 ccacgtcctcaccgagctc 183



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>emb|Z74979.1|SCYOR071C S.cerevisiae chromosome XV reading frame ORF YOR071c
          Length = 3681

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 21   tccacgtcctcaccgagctctgc 43
            ||||||||||||||| |||||||
Sbjct: 2918 tccacgtcctcaccgcgctctgc 2896



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>emb|AL831752.7| Mouse DNA sequence from clone RP23-414J22 on chromosome X, complete
             sequence
          Length = 169807

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    ctttgctcctgccccaggc 90
             |||||||||||||||||||
Sbjct: 33026 ctttgctcctgccccaggc 33044



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>emb|AJ305086.1|BTA305086 Bos taurus partial mRNA for putative alpha-2,3-sialyltransferase
           (st3GalI gene)
          Length = 978

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 11  cagcagggggtccacgtcc 29
           |||||||||||||||||||
Sbjct: 351 cagcagggggtccacgtcc 333


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 756,668
Number of Sequences: 3902068
Number of extensions: 756668
Number of successful extensions: 57475
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57396
Number of HSP's gapped (non-prelim): 79
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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