Clone Name | rbastl50c02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 67.9 bits (34), Expect = 5e-09 Identities = 73/86 (84%) Strand = Plus / Plus Query: 6 ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65 |||||||||| || |||||| || ||||| ||||||||||| || | ||||||||||| Sbjct: 21527829 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 21527888 Query: 66 accttactttgctcctgccccaggca 91 ||||| || |||||||| |||||||| Sbjct: 21527889 accttgctctgctcctggcccaggca 21527914
>dbj|AK103275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124K10, full insert sequence Length = 1437 Score = 67.9 bits (34), Expect = 5e-09 Identities = 73/86 (84%) Strand = Plus / Minus Query: 6 ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65 |||||||||| || |||||| || ||||| ||||||||||| || | ||||||||||| Sbjct: 1244 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 1185 Query: 66 accttactttgctcctgccccaggca 91 ||||| || |||||||| |||||||| Sbjct: 1184 accttgctctgctcctggcccaggca 1159
>dbj|AK066962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091G19, full insert sequence Length = 3099 Score = 67.9 bits (34), Expect = 5e-09 Identities = 73/86 (84%) Strand = Plus / Minus Query: 6 ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65 |||||||||| || |||||| || ||||| ||||||||||| || | ||||||||||| Sbjct: 2868 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 2809 Query: 66 accttactttgctcctgccccaggca 91 ||||| || |||||||| |||||||| Sbjct: 2808 accttgctctgctcctggcccaggca 2783
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 67.9 bits (34), Expect = 5e-09 Identities = 73/86 (84%) Strand = Plus / Plus Query: 6 ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65 |||||||||| || |||||| || ||||| ||||||||||| || | ||||||||||| Sbjct: 21456150 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 21456209 Query: 66 accttactttgctcctgccccaggca 91 ||||| || |||||||| |||||||| Sbjct: 21456210 accttgctctgctcctggcccaggca 21456235
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 67.9 bits (34), Expect = 5e-09 Identities = 73/86 (84%) Strand = Plus / Minus Query: 6 ccttgcagcagggggtccacgtcctcaccgagctctgccagccttgcactcagcttctca 65 |||||||||| || |||||| || ||||| ||||||||||| || | ||||||||||| Sbjct: 118060 ccttgcagcaaggtgtccacatcttcaccaagctctgccagtctcgtgctcagcttctcc 118001 Query: 66 accttactttgctcctgccccaggca 91 ||||| || |||||||| |||||||| Sbjct: 118000 accttgctctgctcctggcccaggca 117975
>gb|AC092800.2| Homo sapiens chromosome 1 clone RP11-25B7, complete sequence Length = 169405 Score = 42.1 bits (21), Expect = 0.26 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttgctcctgccccaggcacac 94 ||||||||||||||||||||| Sbjct: 164133 ttgctcctgccccaggcacac 164153
>emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene Length = 200033 Score = 42.1 bits (21), Expect = 0.26 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ttgctcctgccccaggcacac 94 ||||||||||||||||||||| Sbjct: 69211 ttgctcctgccccaggcacac 69191
>emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BAC contig B18D24 Length = 157180 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 agctctgccagccttgcact 55 |||||||||||||||||||| Sbjct: 73744 agctctgccagccttgcact 73763
>gb|AC100825.2| Homo sapiens chromosome 15, clone RP11-1152M12, complete sequence Length = 127680 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccttgcactcagcttctcaa 66 |||||||||||||||||||| Sbjct: 23066 ccttgcactcagcttctcaa 23085
>gb|AC021553.14| Homo sapiens chromosome 15, clone RP11-709B3, complete sequence Length = 185596 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ccttgcactcagcttctcaa 66 |||||||||||||||||||| Sbjct: 182056 ccttgcactcagcttctcaa 182075
>gb|AY084128.1| Drosophila melanogaster RE20756 full insert cDNA Length = 1378 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ttactttgctcctgccccag 88 |||||||||||||||||||| Sbjct: 697 ttactttgctcctgccccag 716
>gb|AC008651.7|AC008651 Homo sapiens chromosome 5 clone CTB-187A7, complete sequence Length = 147098 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cagcagggggtccacgtcct 30 |||||||||||||||||||| Sbjct: 40882 cagcagggggtccacgtcct 40863
>gb|AC126767.2| Homo sapiens chromosome 5 clone RP11-249M12, complete sequence Length = 172289 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cagcagggggtccacgtcct 30 |||||||||||||||||||| Sbjct: 10241 cagcagggggtccacgtcct 10222
>ref|XM_871589.1| PREDICTED: Bos taurus sialyltransferase 4A (beta-galactosidase alpha-2,3-sialytransferase), transcript variant 2 (SIAT4A), mRNA Length = 1770 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 cagcagggggtccacgtcc 29 ||||||||||||||||||| Sbjct: 401 cagcagggggtccacgtcc 383
>ref|XM_614744.2| PREDICTED: Bos taurus sialyltransferase 4A (beta-galactosidase alpha-2,3-sialytransferase), transcript variant 1 (SIAT4A), mRNA Length = 1689 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 cagcagggggtccacgtcc 29 ||||||||||||||||||| Sbjct: 401 cagcagggggtccacgtcc 383
>gb|AC175711.3| Pan troglodytes BAC clone CH251-100H6 from chromosome unknown, complete sequence Length = 169508 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 41 tgccagccttgcactcagcttct 63 |||||||||||||||| |||||| Sbjct: 152726 tgccagccttgcactctgcttct 152748
>emb|AL358253.16| Human DNA sequence from clone RP11-460G22 on chromosome 1 Contains the 3' end of the gene for a novel protein (KIAA0459), the PLA2G2E gene for phospholipase A2 group IIE and the PLA2G2A gene for phospholipase A2 group IIA (platelets, synovial fluid), complete sequence Length = 101824 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 ttctcaaccttactttgctcctg 82 ||||||||| ||||||||||||| Sbjct: 4049 ttctcaaccatactttgctcctg 4027
>emb|AL356752.13| Human DNA sequence from clone RP11-73M11 on chromosome 13 Contains part of the ATP11A gene for ATPase Class VI type 11A (ATPIH ATPIS KIAA1021), a novel gene and four CpG islands, complete sequence Length = 143517 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 41 tgccagccttgcactcagcttct 63 |||||||||||||||| |||||| Sbjct: 104640 tgccagccttgcactctgcttct 104662
>emb|AL353582.16| Human DNA sequence from clone CTD-2190D5 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 115551 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 tgctcctgccccaggcaca 93 ||||||||||||||||||| Sbjct: 63041 tgctcctgccccaggcaca 63059
>emb|AL139420.13| Human DNA sequence from clone RP4-712E4 on chromosome 1p11.1-13.2 Contains the 5' end of the TBX15 gene for T-box 15, a novel gene, the 3' end of the WARS2 gene for tryptophanyl tRNA synthetase 2 (mitochondrial), the 3' end of a novel gene and a CpG island, complete sequence Length = 122122 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ccacgtcctcaccgagctc 40 ||||||||||||||||||| Sbjct: 61012 ccacgtcctcaccgagctc 61030
>emb|Z70678.1|SCXV55KB S.cerevisiae chromosome XV DNA, 54.7 kb region Length = 54719 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 tccacgtcctcaccgagctctgc 43 ||||||||||||||| ||||||| Sbjct: 37570 tccacgtcctcaccgcgctctgc 37548
>gb|AF380123.1| Hydromys chrysogaster microsatellite W4B9 sequence Length = 376 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 43 ccagccttgcactcagcttctca 65 ||||||||||| ||||||||||| Sbjct: 13 ccagccttgcattcagcttctca 35
>ref|XM_939048.1| PREDICTED: Homo sapiens OTU domain containing 3 (OTUD3), mRNA Length = 6615 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 ttctcaaccttactttgctcctg 82 ||||||||| ||||||||||||| Sbjct: 4273 ttctcaaccatactttgctcctg 4251
>ref|XM_375697.3| PREDICTED: Homo sapiens OTU domain containing 3 (OTUD3), mRNA Length = 6615 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 ttctcaaccttactttgctcctg 82 ||||||||| ||||||||||||| Sbjct: 4273 ttctcaaccatactttgctcctg 4251
>gb|AC161617.4| Pan troglodytes BAC clone CH251-548L6 from chromosome unknown, complete sequence Length = 218767 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 41 tgccagccttgcactcagcttct 63 |||||||||||||||| |||||| Sbjct: 44102 tgccagccttgcactctgcttct 44080
>gb|AF272737.1|AF272737 Streptomyces griseus strain IFO13350 carotinoid biosynthesis gene cluster, complete sequence Length = 10878 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 gggtccacgtcctcaccga 36 ||||||||||||||||||| Sbjct: 5714 gggtccacgtcctcaccga 5696
>gb|AC009232.3| Homo sapiens BAC clone RP11-352J11 from 2, complete sequence Length = 139885 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 tgccagccttgcactcagc 59 ||||||||||||||||||| Sbjct: 33711 tgccagccttgcactcagc 33729
>dbj|AB007928.2| Homo sapiens mRNA for KIAA0459 protein, partial cds Length = 6490 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 ttctcaaccttactttgctcctg 82 ||||||||| ||||||||||||| Sbjct: 4145 ttctcaaccatactttgctcctg 4123
>emb|Z64903.1|HS177C2R H.sapiens CpG island DNA genomic Mse1 fragment, clone 177c2, reverse read cpg177c2.rt1c Length = 305 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 ccacgtcctcaccgagctc 40 ||||||||||||||||||| Sbjct: 201 ccacgtcctcaccgagctc 183
>emb|Z74979.1|SCYOR071C S.cerevisiae chromosome XV reading frame ORF YOR071c Length = 3681 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 tccacgtcctcaccgagctctgc 43 ||||||||||||||| ||||||| Sbjct: 2918 tccacgtcctcaccgcgctctgc 2896
>emb|AL831752.7| Mouse DNA sequence from clone RP23-414J22 on chromosome X, complete sequence Length = 169807 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 ctttgctcctgccccaggc 90 ||||||||||||||||||| Sbjct: 33026 ctttgctcctgccccaggc 33044
>emb|AJ305086.1|BTA305086 Bos taurus partial mRNA for putative alpha-2,3-sialyltransferase (st3GalI gene) Length = 978 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 cagcagggggtccacgtcc 29 ||||||||||||||||||| Sbjct: 351 cagcagggggtccacgtcc 333 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 756,668 Number of Sequences: 3902068 Number of extensions: 756668 Number of successful extensions: 57475 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57396 Number of HSP's gapped (non-prelim): 79 length of query: 94 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 73 effective length of database: 17,151,101,840 effective search space: 1252030434320 effective search space used: 1252030434320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)