ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl50c01 |
|---|---|
| Clone Library Name | barley_pub |
>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) (hNotch4) [Contains: Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 2003 Score = 30.0 bits (66), Expect = 1.5 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = +3 Query: 114 PCAVPILESQVPITPSIQSTCLPGXXXXXXXXXXXXXXXQREVTSQLLT*GPAFCSKRLQ 293 P + + S P+TPS TCLPG Q ++ P+FCSKR + Sbjct: 85 PAPLGLPSSPSPLTPSFLCTCLPG---------FTGERCQAKLEDPC---PPSFCSKRGR 132 Query: 294 CLARLENR-ACFC 329 C + R C C Sbjct: 133 CHIQASGRPQCSC 145
>LOXL2_PONPY (Q5RFQ6) Lysyl oxidase homolog 2 precursor (EC 1.4.3.-) (Lysyl| oxidase-like protein 2) Length = 774 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 185 SWKASGLYGRGNGHLGF*DRHCT 117 SW AS YG+G G + + HCT Sbjct: 107 SWTASSSYGKGEGPIWLDNLHCT 129
>LOXL2_HUMAN (Q9Y4K0) Lysyl oxidase homolog 2 precursor (EC 1.4.3.-) (Lysyl| oxidase-like protein 2) (Lysyl oxidase-related protein 2) (Lysyl oxidase-related protein WS9-14) Length = 774 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 185 SWKASGLYGRGNGHLGF*DRHCT 117 SW AS YG+G G + + HCT Sbjct: 107 SWTASSSYGKGEGPIWLDNLHCT 129
>SIG10_HUMAN (Q96LC7) Sialic acid-binding Ig-like lectin 10 precursor| (Siglec-10) (Siglec-like protein 2) Length = 697 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 248 TRHLSLELSLKPFPSLVKREASWKASGLY 162 ++H+SL LS+ P L+ SW+A GL+ Sbjct: 433 SQHVSLSLSVHYSPKLLGPSCSWEAEGLH 461
>G6PI_CHLTE (Q8KDQ7) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 559 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -1 Query: 110 FNGVHSQSVIPCKQVTHRF 54 F G HSQ++IP Q HRF Sbjct: 324 FFGAHSQAIIPYDQYLHRF 342
>SIG11_HUMAN (Q96RL6) Sialic acid-binding Ig-like lectin 11 precursor| (Siglec-11) (Sialic acid-binding lectin 11) Length = 686 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 248 TRHLSLELSLKPFPSLVKREASWKASGLY 162 ++H+SL LS+ P L+ SW+A GL+ Sbjct: 432 SQHVSLSLSVHYPPQLLGPSCSWEAEGLH 460
>ACVS_NOCLA (P27743) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase| (EC 6.3.2.26) (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine synthetase) (ACV synthetase) (ACVS) Length = 3649 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/40 (32%), Positives = 17/40 (42%) Frame = -2 Query: 184 PGRQVDCMDGVMGTWDSRIGTAHGNSMECILSL*SRVNKL 65 PGR + V TW R+ HG+ L R N+L Sbjct: 2398 PGRCTRLFEEVAATWPDRVAVVHGDVRLTYRELNERANRL 2437
>LDH1_STAAW (P65257) L-lactate dehydrogenase 1 (EC 1.1.1.27) (L-LDH 1)| Length = 317 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -1 Query: 224 SLKPFPSLVKREASWKASGLYGRGNGHLGF*DRHCTWKFNGVHSQSVIPCKQVTHRFRFR 45 +LK F S+V + K G++ + + TWKF+G+ + VI + RFR Sbjct: 99 NLKIFKSIVGEVMASKFDGIFLVATNPVDIL-AYATWKFSGLPKERVIGSGTILDSARFR 157 Query: 44 SLKS 33 L S Sbjct: 158 LLLS 161
>LDH1_STAAS (Q6GCN4) L-lactate dehydrogenase 1 (EC 1.1.1.27) (L-LDH 1)| Length = 317 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -1 Query: 224 SLKPFPSLVKREASWKASGLYGRGNGHLGF*DRHCTWKFNGVHSQSVIPCKQVTHRFRFR 45 +LK F S+V + K G++ + + TWKF+G+ + VI + RFR Sbjct: 99 NLKIFKSIVGEVMASKFDGIFLVATNPVDIL-AYATWKFSGLPKERVIGSGTILDSARFR 157 Query: 44 SLKS 33 L S Sbjct: 158 LLLS 161
>LDH1_STAAR (Q6GK73) L-lactate dehydrogenase 1 (EC 1.1.1.27) (L-LDH 1)| Length = 317 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -1 Query: 224 SLKPFPSLVKREASWKASGLYGRGNGHLGF*DRHCTWKFNGVHSQSVIPCKQVTHRFRFR 45 +LK F S+V + K G++ + + TWKF+G+ + VI + RFR Sbjct: 99 NLKIFKSIVGEVMASKFDGIFLVATNPVDIL-AYATWKFSGLPKERVIGSGTILDSARFR 157 Query: 44 SLKS 33 L S Sbjct: 158 LLLS 161
>LDH1_STAAN (P65256) L-lactate dehydrogenase 1 (EC 1.1.1.27) (L-LDH 1)| Length = 317 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -1 Query: 224 SLKPFPSLVKREASWKASGLYGRGNGHLGF*DRHCTWKFNGVHSQSVIPCKQVTHRFRFR 45 +LK F S+V + K G++ + + TWKF+G+ + VI + RFR Sbjct: 99 NLKIFKSIVGEVMASKFDGIFLVATNPVDIL-AYATWKFSGLPKERVIGSGTILDSARFR 157 Query: 44 SLKS 33 L S Sbjct: 158 LLLS 161
>LDH1_STAAM (P65255) L-lactate dehydrogenase 1 (EC 1.1.1.27) (L-LDH 1)| Length = 317 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -1 Query: 224 SLKPFPSLVKREASWKASGLYGRGNGHLGF*DRHCTWKFNGVHSQSVIPCKQVTHRFRFR 45 +LK F S+V + K G++ + + TWKF+G+ + VI + RFR Sbjct: 99 NLKIFKSIVGEVMASKFDGIFLVATNPVDIL-AYATWKFSGLPKERVIGSGTILDSARFR 157 Query: 44 SLKS 33 L S Sbjct: 158 LLLS 161
>LDH1_STAAC (Q5HJD7) L-lactate dehydrogenase 1 (EC 1.1.1.27) (L-LDH 1)| Length = 317 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -1 Query: 224 SLKPFPSLVKREASWKASGLYGRGNGHLGF*DRHCTWKFNGVHSQSVIPCKQVTHRFRFR 45 +LK F S+V + K G++ + + TWKF+G+ + VI + RFR Sbjct: 99 NLKIFKSIVGEVMASKFDGIFLVATNPVDIL-AYATWKFSGLPKERVIGSGTILDSARFR 157 Query: 44 SLKS 33 L S Sbjct: 158 LLLS 161
>SINA4_ARATH (Q9STN8) Ubiquitin ligase SINAT4 (EC 6.3.2.-) (Seven in absentia| homolog 4) Length = 327 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = +1 Query: 40 RLRKRNRCVTCLHGITD*ECTPL-----NFHVQCRS*NPKCPLPRPY 165 ++R NRC TC + D C L + + C+ N CP PY Sbjct: 89 KVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYNLGCPEIFPY 135
>TNFB_PANTR (P61125) Lymphotoxin-alpha precursor (LT-alpha) (TNF-beta) (Tumor| necrosis factor ligand superfamily member 1) Length = 205 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 84 HRLRMHSIEFPCAVPILESQVPITPSIQSTCL 179 H +++ S ++P VP+L SQ + P +Q L Sbjct: 133 HEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWL 164
>TNFB_MACMU (Q5TM20) Lymphotoxin-alpha precursor (LT-alpha) (TNF-beta) (Tumor| necrosis factor ligand superfamily member 1) Length = 205 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 84 HRLRMHSIEFPCAVPILESQVPITPSIQSTCL 179 H +++ S ++P VP+L SQ + P +Q L Sbjct: 133 HEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWL 164
>TNFB_HUMAN (P01374) Lymphotoxin-alpha precursor (LT-alpha) (TNF-beta) (Tumor| necrosis factor ligand superfamily member 1) Length = 205 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 84 HRLRMHSIEFPCAVPILESQVPITPSIQSTCL 179 H +++ S ++P VP+L SQ + P +Q L Sbjct: 133 HEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWL 164
>FINQ_ECOLI (P18809) Protein finQ| Length = 342 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -2 Query: 187 LPGRQVDCMDGVMGTWDSRIGTAHGNSMECI 95 L + +D + G++G DSR G MECI Sbjct: 162 LKEKNIDVVGGIIGMEDSRGGLLGSRKMECI 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,050,746 Number of Sequences: 219361 Number of extensions: 910198 Number of successful extensions: 2062 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2022 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2060 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
