ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK042325.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.3
2emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chr... 42 1.3
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
4dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0

>dbj|AK042325.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630082H19 product:ubiquitin conjugating
           enzyme 7 interacting protein 3, full insert sequence
          Length = 1536

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 caggtccagggacaggcacct 179
           |||||||||||||||||||||
Sbjct: 217 caggtccagggacaggcacct 237



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>emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chromosome 2, complete
              sequence
          Length = 193718

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    caggtccagggacaggcacct 179
              |||||||||||||||||||||
Sbjct: 190055 caggtccagggacaggcacct 190035



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 268      ccaccgacaccgcgaaaaac 287
                ||||||||||||||||||||
Sbjct: 19440316 ccaccgacaccgcgaaaaac 19440297



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>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0409B11
          Length = 168354

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    ccaccgacaccgcgaaaaac 287
              ||||||||||||||||||||
Sbjct: 129854 ccaccgacaccgcgaaaaac 129835


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,096,739
Number of Sequences: 3902068
Number of extensions: 3096739
Number of successful extensions: 52599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52580
Number of HSP's gapped (non-prelim): 19
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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