ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl50b09 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/26 (84%), Positives = 23/26 (88%) Frame = -2 Query: 334 LYPNTSDHTGQAEGLTARGIPNSISI 257 LYPNTSDH G A GLTA+GIPNSISI Sbjct: 837 LYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 46.2 bits (108), Expect = 2e-05 Identities = 20/26 (76%), Positives = 24/26 (92%) Frame = -2 Query: 334 LYPNTSDHTGQAEGLTARGIPNSISI 257 ++PNTSD+ G AEG+TARGIPNSISI Sbjct: 838 MFPNTSDNKGAAEGITARGIPNSISI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 45.8 bits (107), Expect = 3e-05 Identities = 21/26 (80%), Positives = 23/26 (88%) Frame = -2 Query: 334 LYPNTSDHTGQAEGLTARGIPNSISI 257 LYPNTSD TG A G+TA+GIPNSISI Sbjct: 841 LYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 44.3 bits (103), Expect = 8e-05 Identities = 21/26 (80%), Positives = 22/26 (84%) Frame = -2 Query: 334 LYPNTSDHTGQAEGLTARGIPNSISI 257 LYPNTSD G A GL+ARGIPNSISI Sbjct: 845 LYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 1/27 (3%) Frame = -2 Query: 334 LYPNTSDHTGQ-AEGLTARGIPNSISI 257 LYPNTSD T + +GLTA GIPNSISI Sbjct: 851 LYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.3 bits (72), Expect = 0.30 Identities = 16/24 (66%), Positives = 16/24 (66%) Frame = -2 Query: 328 PNTSDHTGQAEGLTARGIPNSISI 257 P T H EGLT RGIPNSISI Sbjct: 841 PYTLLHPSSKEGLTFRGIPNSISI 864
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 31.2 bits (69), Expect = 0.67 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 328 PNTSDHTGQAEGLTARGIPNSISI 257 P T H EGLT +GIPNSISI Sbjct: 841 PYTLLHRSSEEGLTFKGIPNSISI 864
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 30.8 bits (68), Expect = 0.88 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 328 PNTSDHTGQAEGLTARGIPNSISI 257 P T + EGLT RGIPNSISI Sbjct: 843 PYTLLYPSSEEGLTCRGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 328 PNTSDHTGQAEGLTARGIPNSISI 257 P T + EGLT RGIPNSISI Sbjct: 838 PYTLLYPSSKEGLTFRGIPNSISI 861
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 328 PNTSDHTGQAEGLTARGIPNSISI 257 P T + EGLT RGIPNSISI Sbjct: 830 PYTLLYPSSEEGLTFRGIPNSISI 853
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -2 Query: 334 LYPNTSDHTGQAEGLTARGIPNSISI 257 L+PN+ EGLT RGIPNSISI Sbjct: 847 LHPNS-------EGLTCRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -2 Query: 328 PNTSDHTGQAEGLTARGIPNSISI 257 P T + EGLT RGIPNSISI Sbjct: 816 PYTLLYPSSEEGLTFRGIPNSISI 839
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = -2 Query: 310 TGQAEGLTARGIPNSISI 257 T + EGLT RGIPNSISI Sbjct: 845 TCEDEGLTFRGIPNSISI 862
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 184 CVCV-------CDKELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 47 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -2 Query: 298 EGLTARGIPNSISI 257 EGLT RGIPNSISI Sbjct: 844 EGLTFRGIPNSISI 857
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 184 CVCV-------CDKELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 47 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.1 bits (61), Expect = 5.7 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = -2 Query: 328 PNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVCVCDK 164 PN + HT Q AE A+ +P S S R L LC P + P AC +C+ Sbjct: 59 PNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKLLCET 118 Query: 163 ELCRCMNN 140 CM N Sbjct: 119 VRGECMEN 126
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -1 Query: 329 PKHLRPHGTGRGAHRQGHPE 270 P L H +G HRQGHPE Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -1 Query: 329 PKHLRPHGTGRGAHRQGHPE 270 P L H +G HRQGHPE Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = -2 Query: 298 EGLTARGIPNSISI 257 EGLT +GIPNS+SI Sbjct: 846 EGLTGKGIPNSVSI 859
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -2 Query: 268 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDKELC-----RCMNN*GNKGACTTGLI 104 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 103 GMRKL 89 G+R L Sbjct: 304 GLRSL 308
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -1 Query: 290 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 204 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777
>ACV1C_HUMAN (Q8NER5) Activin receptor type 1C precursor (EC 2.7.11.30)| (ACTR-IC) (Activin receptor-like kinase 7) (ALK-7) Length = 493 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -2 Query: 238 RRDLMLLCYPCLLTPELACVC-VCDKELCRCMNN*GNKGAC 119 R+ L+LL L+P L CVC +CD C +GAC Sbjct: 10 RQALLLLAAAAELSPGLKCVCLLCDSSNFTCQ----TEGAC 46 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,073,343 Number of Sequences: 219361 Number of extensions: 956672 Number of successful extensions: 2365 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2273 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2358 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
