ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_528522.1| PREDICTED: Pan troglodytes similar to XPMC2 pre... 40 3.4
2gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complet... 40 3.4
3emb|CR860428.1| Pongo pygmaeus mRNA; cDNA DKFZp459I061 (from clo... 40 3.4
4gb|AC009560.10| Homo sapiens chromosome 15, clone RP11-219B17, c... 40 3.4
5gb|AC018437.10| Homo sapiens chromosome 8, clone RP11-77B22, com... 40 3.4
6gb|AC102926.14| Mus musculus chromosome 3, clone RP24-237D17, co... 40 3.4
7gb|AC087349.17| Homo sapiens chromosome 8, clone RP11-339A23, co... 40 3.4
8dbj|BS000180.1| Pan troglodytes chromosome 22 clone:RP43-184I13,... 40 3.4
9gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, co... 40 3.4
10dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 3.4
11dbj|AP000567.2| Homo sapiens genomic DNA, chromosome 21q22.1, cl... 40 3.4

>ref|XM_528522.1| PREDICTED: Pan troglodytes similar to XPMC2 prevents mitotic
           catastrophe 2 homolog; Xenopus prevents mitotic
           catastrophe 2 homolog (LOC473152), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 92  aacaatatcaccatctgtcc 111
           ||||||||||||||||||||
Sbjct: 777 aacaatatcaccatctgtcc 758



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>gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complete sequence
          Length = 189927

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    taaggagcaatgtcgacagc 150
              ||||||||||||||||||||
Sbjct: 131822 taaggagcaatgtcgacagc 131841



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>emb|CR860428.1| Pongo pygmaeus mRNA; cDNA DKFZp459I061 (from clone DKFZp459I061)
          Length = 3252

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 167 aggaggcgaaa-gctgcggttaaggaga 193
           ||||||||||| ||||||||||||||||
Sbjct: 100 aggaggcgaaaagctgcggttaaggaga 127



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>gb|AC009560.10| Homo sapiens chromosome 15, clone RP11-219B17, complete sequence
          Length = 177308

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   acagcagcacctataaagtg 165
             ||||||||||||||||||||
Sbjct: 67976 acagcagcacctataaagtg 67995



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>gb|AC018437.10| Homo sapiens chromosome 8, clone RP11-77B22, complete sequence
          Length = 192586

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   cacctataaagtgcaggagg 172
             ||||||||||||||||||||
Sbjct: 51540 cacctataaagtgcaggagg 51559



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>gb|AC102926.14| Mus musculus chromosome 3, clone RP24-237D17, complete sequence
          Length = 177195

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   taaggagaatgcccctgtct 205
             ||||||||||||||||||||
Sbjct: 15863 taaggagaatgcccctgtct 15844



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>gb|AC087349.17| Homo sapiens chromosome 8, clone RP11-339A23, complete sequence
          Length = 96337

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 167   aggaggcgaaa-gctgcggttaaggaga 193
             ||||||||||| ||||||||||||||||
Sbjct: 60248 aggaggcgaaaagctgcggttaaggaga 60275



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>dbj|BS000180.1| Pan troglodytes chromosome 22 clone:RP43-184I13, map 22, complete
            sequences
          Length = 158703

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   caaacaatatcaccatctgt 109
            ||||||||||||||||||||
Sbjct: 6724 caaacaatatcaccatctgt 6743



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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   taaggagaatgcccctgtct 205
             ||||||||||||||||||||
Sbjct: 43555 taaggagaatgcccctgtct 43574



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>dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, section 52/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     caaacaatatcaccatctgt 109
              ||||||||||||||||||||
Sbjct: 183837 caaacaatatcaccatctgt 183856



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>dbj|AP000567.2| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B41N19, SOD-AML
              region, complete sequence
          Length = 181283

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     caaacaatatcaccatctgt 109
              ||||||||||||||||||||
Sbjct: 144068 caaacaatatcaccatctgt 144087


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,113,011
Number of Sequences: 3902068
Number of extensions: 2113011
Number of successful extensions: 36147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 36134
Number of HSP's gapped (non-prelim): 15
length of query: 264
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 242
effective length of database: 17,147,199,772
effective search space: 4149622344824
effective search space used: 4149622344824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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