>gb|AC127256.4| Mus musculus BAC clone RP24-296G17 from chromosome 18, complete
             sequence
          Length = 178519

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 136   acggccactgctatccgacccacaaccttg 165
             ||||||||||||||||||| |||| |||||
Sbjct: 56545 acggccactgctatccgacacacatccttg 56574

>emb|AL009028.1|HS164L12 Human DNA sequence from clone RP1-164L12 on chromosome Xq13.1-21.2
             Contains the 5' end of the ITM2A gene for integral
             membrane protein 2A, complete sequence
          Length = 135090

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 96    aagaagcaaacacaagacagactgtagaaa 125
             |||||||||||| ||||||||||| |||||
Sbjct: 84118 aagaagcaaacagaagacagactgaagaaa 84089

>gb|BT017823.1| Zea mays clone EL01N0508B10.c mRNA sequence
          Length = 1099

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 365 gagccaatggaacttctccaggctc 389
           |||||||||||||||||||| ||||
Sbjct: 329 gagccaatggaacttctccaagctc 305

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 95       gaagaagcaaacacaagacag 115
                |||||||||||||||||||||
Sbjct: 34614685 gaagaagcaaacacaagacag 34614705

>gb|AC164316.3| Mus musculus BAC clone RP23-16B4 from chromosome 6, complete sequence
          Length = 222892

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   caccgggagaaaataagggtt 191
             |||||||||||||||||||||
Sbjct: 15290 caccgggagaaaataagggtt 15270

>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    gaagaagcaaacacaagacag 115
             |||||||||||||||||||||
Sbjct: 72402 gaagaagcaaacacaagacag 72422

>gb|AC011462.4| Homo sapiens chromosome 19 clone CTC-435M10, complete sequence
          Length = 148841

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 310    atgcttgttctagaaaattaa 330
              |||||||||||||||||||||
Sbjct: 137776 atgcttgttctagaaaattaa 137756

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 95       gaagaagcaaacacaagacag 115
                |||||||||||||||||||||
Sbjct: 34704757 gaagaagcaaacacaagacag 34704777

>gb|AC011510.7|AC011510 Homo sapiens chromosome 19 clone CTD-2195B23, complete sequence
          Length = 129402

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 310    atgcttgttctagaaaattaa 330
              |||||||||||||||||||||
Sbjct: 121737 atgcttgttctagaaaattaa 121757

>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
             sequence
          Length = 129302

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    gaagaagcaaacacaagacag 115
             |||||||||||||||||||||
Sbjct: 28648 gaagaagcaaacacaagacag 28628

>gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 sequence, complete sequence
          Length = 115963

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 314   ttgttctagaaaattaataat 334
             |||||||||||||||||||||
Sbjct: 75512 ttgttctagaaaattaataat 75492

>gb|AY107916.1| Zea mays PCO138780 mRNA sequence
          Length = 465

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 365 gagccaatggaacttctccaggctc 389
           |||||||||||||||||||| ||||
Sbjct: 212 gagccaatggaacttctccaagctc 188

>gb|AC171502.2| Mus musculus BAC clone RP23-242G4 from chromosome 6, complete sequence
          Length = 209147

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 171    caccgggagaaaataagggtt 191
              |||||||||||||||||||||
Sbjct: 158385 caccgggagaaaataagggtt 158365

>gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, complete sequence
          Length = 248540

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     ctcacgcatgtatgcatatc 34
              ||||||||||||||||||||
Sbjct: 227811 ctcacgcatgtatgcatatc 227792

>gb|AC111620.5| Rattus norvegicus 2 BAC CH230-123K4 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 59971

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   gcttgttctagaaaattaat 331
             ||||||||||||||||||||
Sbjct: 41537 gcttgttctagaaaattaat 41518

>gb|AY596604.1| Saccharum officinarum clone SCRLLR1038D03, complete sequence
          Length = 2630

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 365  gagccaatggaacttctccaggctcgcacaca 396
            |||| ||||||||||||||| |||||| ||||
Sbjct: 2113 gagcaaatggaacttctccaagctcgctcaca 2082

>gb|AC127588.3| Mus musculus BAC clone RP23-106G21 from chromosome 18, complete sequence
          Length = 180320

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 195    actaggtttccatctcctccatca 218
              |||||||||||||||| |||||||
Sbjct: 138745 actaggtttccatctcatccatca 138768

>gb|AC123531.4| Mus musculus BAC clone RP24-289C11 from chromosome 15, complete
             sequence
          Length = 165766

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tttccatctcctccatcact 220
             ||||||||||||||||||||
Sbjct: 33496 tttccatctcctccatcact 33477

>gb|AC024877.2| Caenorhabditis elegans cosmid Y95B8A, complete sequence
          Length = 104970

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    tcaacactgccaccactcacacaa 94
             |||| |||||||||||||||||||
Sbjct: 92222 tcaaaactgccaccactcacacaa 92199

>gb|AC124675.9| Mus musculus chromosome 15, clone RP24-88M7, complete sequence
          Length = 207904

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   tttccatctcctccatcact 220
             ||||||||||||||||||||
Sbjct: 29648 tttccatctcctccatcact 29667

>gb|AC160464.3| Mus musculus chromosome 7, clone RP23-256J14, complete sequence
          Length = 175716

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     ctcacgcatgtatgcatatc 34
              ||||||||||||||||||||
Sbjct: 157407 ctcacgcatgtatgcatatc 157426

>gb|AC087292.14| Homo sapiens chromosome 17, clone RP11-810M2, complete sequence
          Length = 195144

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 88    cacacaagaagaagcaaacacaagacag 115
             |||||||||||||||  |||||||||||
Sbjct: 62973 cacacaagaagaagctcacacaagacag 63000

>gb|AC067815.5| Homo sapiens, clone RP11-459C13, complete sequence
          Length = 111370

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 88     cacacaagaagaagcaaacacaagacag 115
              |||||||||||||||  |||||||||||
Sbjct: 109556 cacacaagaagaagctcacacaagacag 109583

>gb|AC098679.3| Homo sapiens BAC clone RP11-597D13 from 4, complete sequence
          Length = 188513

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 77     ctgccaccactcacacaagaagaa 100
              ||||||| ||||||||||||||||
Sbjct: 169406 ctgccacaactcacacaagaagaa 169383

>gb|AC020899.6| Homo sapiens chromosome 5 clone CTC-484M2, complete sequence
          Length = 164286

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    tgccaccactcacacaagaa 97
             ||||||||||||||||||||
Sbjct: 91335 tgccaccactcacacaagaa 91354

>dbj|AB010695.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDK4
          Length = 78596

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tatgcatatcaatctcacaa 44
             ||||||||||||||||||||
Sbjct: 68928 tatgcatatcaatctcacaa 68909

>gb|AY104086.1| Zea mays PCO095808 mRNA sequence
          Length = 1163

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  cacaagaagaagcaaacaca 109
           ||||||||||||||||||||
Sbjct: 604 cacaagaagaagcaaacaca 623

>gb|U38786.1|TVU38786 Trichomonas vaginalis calmodulin (CAM) and E2 ubiquitin-conjugating
           enzyme (TvUBC1) genes, partial cds
          Length = 1252

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  accactcacacaagaagaag 101
           ||||||||||||||||||||
Sbjct: 302 accactcacacaagaagaag 321

>gb|AC155239.2| Mus musculus BAC clone RP24-462F23 from chromosome 14, complete
             sequence
          Length = 170006

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 205   catctcctccatcactgcacaagt 228
             |||||||||||||||||| |||||
Sbjct: 64416 catctcctccatcactgctcaagt 64393

>gb|AC092112.17| Homo sapiens 12 BAC RP11-134N1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86057

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   tctcctccatcactgcacaa 226
             ||||||||||||||||||||
Sbjct: 35451 tctcctccatcactgcacaa 35470


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,750,596
Number of Sequences: 3902068
Number of extensions: 3750596
Number of successful extensions: 72112
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72011
Number of HSP's gapped (non-prelim): 101
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)