ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IPNS_STRCT (Q53932) Isopenicillin N synthetase (EC 1.21.3.1) (IP... 30 1.8
2LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 p... 29 2.3
3SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 2.3
4LASS1_HUMAN (P27544) LAG1 longevity assurance homolog 1 (UOG-1 p... 28 5.2
5K1718_HUMAN (Q6ZMT4) Protein KIAA1718 28 6.8
6Y2077_ARCFU (O28202) Hypothetical protein AF2077 precursor 28 6.8
7HEMH_VIBVU (Q8DFM2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferr... 28 6.8
8K1718_MOUSE (Q3UWM4) Protein KIAA1718 28 6.8
9PP2CD_HUMAN (O15297) Protein phosphatase 2C isoform delta (EC 3.... 27 8.9
10PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkw... 27 8.9
11DEGS_ECOLI (P0AEE3) Protease degS precursor (EC 3.4.21.-) 27 8.9
12DEGS_ECO57 (P0AEE4) Protease degS precursor (EC 3.4.21.-) 27 8.9

>IPNS_STRCT (Q53932) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)|
           (Isopenicillin N synthase)
          Length = 321

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
 Frame = -3

Query: 391 RQRWQVLRRGREVLEGW------LGLGRRVVDGG----EVQLGVGEQRSPWEAHGGERHQ 242
           R  + + R GRE +E W       G    ++  G    EV +   E+R P     GE++ 
Sbjct: 87  RNGYYMARPGRETVESWCYLNPSFGEDHPMMKAGTPMHEVNVWPDEERHPDFGSFGEQYH 146

Query: 241 LQGLAVRLACCG 206
            +  A R  CCG
Sbjct: 147 REVSASRRCCCG 158



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>LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 protein)|
          Length = 350

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -3

Query: 316 DGGEVQLGVGEQRSPWEAHGGERHQLQGLAVRLACCGFFSKMFVYGWL----FPVSKL 155
           D  +VQL   +    ++A GG  H+L GL   L C  F    F + W     FP+  L
Sbjct: 210 DVSDVQLEFTKLNIYFKARGGAYHRLHGLVANLGCLSF---CFCWFWFRLYWFPLKVL 264



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>SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 882

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 260 VSFPWRTLLSDAELYFSSVDDATTKPEPTF 349
           V FP  + LSDA L  S ++ ATT+PE  F
Sbjct: 204 VDFPTNSNLSDASLVPSFLEIATTRPETMF 233



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>LASS1_HUMAN (P27544) LAG1 longevity assurance homolog 1 (UOG-1 protein) (LAG1|
           protein)
          Length = 350

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 316 DGGEVQLGVGEQRSPWEAHGGERHQLQGLAVRLACCGF-FSKMFVYGWLFPVSKL 155
           D  +VQL   +    +++ GG  H+L  LA  L C  F FS  +   + FP+  L
Sbjct: 210 DISDVQLEFTKLNIYFKSRGGSYHRLHALAADLGCLSFGFSWFWFRLYWFPLKVL 264



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>K1718_HUMAN (Q6ZMT4) Protein KIAA1718|
          Length = 941

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 219 LHAVVSSQKCLCMGGCFLY 163
           +HAV++SQ C+  GG FL+
Sbjct: 353 IHAVLTSQDCMAFGGNFLH 371



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>Y2077_ARCFU (O28202) Hypothetical protein AF2077 precursor|
          Length = 270

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 290 DAELYFSSVDDATTKPEPTFQY 355
           D ELYFS+ +D  T   PTF Y
Sbjct: 72  DVELYFSTPNDILTFSNPTFLY 93



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>HEMH_VIBVU (Q8DFM2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 319

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 403 AGGARQRWQVLRRGREVLEGWLGLGRRVVDGGEV 302
           A   RQ WQV  +G  +L  + G+ +R  D G+V
Sbjct: 173 AESVRQSWQVQGKGDYLLCSYHGIPQRYADNGDV 206



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>K1718_MOUSE (Q3UWM4) Protein KIAA1718|
          Length = 940

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 219 LHAVVSSQKCLCMGGCFLY 163
           +HAV++SQ C+  GG FL+
Sbjct: 353 IHAVLTSQDCMAFGGNFLH 371



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>PP2CD_HUMAN (O15297) Protein phosphatase 2C isoform delta (EC 3.1.3.16)|
           (PP2C-delta) (p53-induced protein phosphatase 1)
           (Protein phosphatase magnesium-dependent 1 delta)
          Length = 605

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +2

Query: 302 YFSSVDDATTKPEPTFQYFPSP----AQHLPPLP 391
           Y   V     +PEPT +  PSP    +Q LPP P
Sbjct: 20  YMEDVTQIVVEPEPTAEEKPSPRRSLSQPLPPRP 53



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>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA (EC|
           2.7.11.1)
          Length = 742

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 323 ATTKPEPTFQYFPSPAQHLPPLP 391
           ATT P P+    P P  H PP P
Sbjct: 290 ATTSPNPSLAIEPPPPSHGPPRP 312



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>DEGS_ECOLI (P0AEE3) Protease degS precursor (EC 3.4.21.-)|
          Length = 355

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 379 QVLRRGREVLEGWLGLGRRVVDGGEVQLGVGEQRSPWEAHGGERHQLQGLAV 224
           +++R GR V+ G++G+G             G + +P  A GG   QLQG+ V
Sbjct: 247 KLIRDGR-VIRGYIGIG-------------GREIAPLHAQGGGIDQLQGIVV 284



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>DEGS_ECO57 (P0AEE4) Protease degS precursor (EC 3.4.21.-)|
          Length = 355

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 379 QVLRRGREVLEGWLGLGRRVVDGGEVQLGVGEQRSPWEAHGGERHQLQGLAV 224
           +++R GR V+ G++G+G             G + +P  A GG   QLQG+ V
Sbjct: 247 KLIRDGR-VIRGYIGIG-------------GREIAPLHAQGGGIDQLQGIVV 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,065,876
Number of Sequences: 219361
Number of extensions: 938540
Number of successful extensions: 3110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3107
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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