ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kin... 28 7.0
2RPOC2_CYAPA (P48120) DNA-directed RNA polymerase beta'' chain (E... 27 9.2
3EPS8_MOUSE (Q08509) Epidermal growth factor receptor kinase subs... 27 9.2

>M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kinase 10 (EC|
            2.7.11.25) (Mixed lineage kinase 2) (Protein kinase MST)
          Length = 954

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 187  PHLTPWRLPRFGKKKRQEGPSSRTCTLRSSSPPAHKH*KLDCPDERADQ 333
            P L PW+L  FG +     P SR  T  S  PP+ +   LD   E  +Q
Sbjct: 894  PRLDPWKLVSFG-RTLTISPPSRPDTPESPGPPSVQPTLLDMDMEGQNQ 941



to top

>RPOC2_CYAPA (P48120) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1265

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 165 IKTNGPDSTLDSLAPSTLR*KEKTGRPQQSNLYTTVFF 278
           ++TN   + + S AP+T R KEKT R  ++++   V+F
Sbjct: 422 VETNDLLAEIASTAPNTRRAKEKTTRELRTDIAGEVYF 459



to top

>EPS8_MOUSE (Q08509) Epidermal growth factor receptor kinase substrate 8|
          Length = 821

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 223 KKKRQEGPSSRTCTLRSSSPPAHKH*KLDCPDERADQFIHCTELQQYKYMFS 378
           KK +++GP     TLR+  PP              D+F+ C   Q++K+ F+
Sbjct: 304 KKSKRKGPGEGVLTLRAKPPP-------------PDEFVDC--FQKFKHGFN 340


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,598,478
Number of Sequences: 219361
Number of extensions: 1350460
Number of successful extensions: 2940
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2938
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top