Clone Name | rbastl50b04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC002510.3| Arabidopsis thaliana chromosome 2 clone T32G6 map CIC11C08, complete sequence Length = 91979 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aaaatgtccaacgacaaaaaa 100 ||||||||||||||||||||| Sbjct: 55454 aaaatgtccaacgacaaaaaa 55474
>gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178328 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 ggcacataaacattaaaaact 305 ||||||||||||||||||||| Sbjct: 92346 ggcacataaacattaaaaact 92366
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 acataaacattaaaaactaga 308 ||||||||||||||||||||| Sbjct: 16847337 acataaacattaaaaactaga 16847357
>gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, complete sequence Length = 233877 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 cactataaatatcaatggata 54 ||||||||||||||||||||| Sbjct: 41306 cactataaatatcaatggata 41286
>gb|AC092845.6| Homo sapiens BAC clone RP11-480J15 from 2, complete sequence Length = 85660 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 atcaatggatacctgggaggg 64 ||||||||||||||||||||| Sbjct: 1935 atcaatggatacctgggaggg 1915
>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete sequence Length = 147452 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 acataaacattaaaaactaga 308 ||||||||||||||||||||| Sbjct: 31789 acataaacattaaaaactaga 31809
>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence Length = 173169 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 atcaatggatacctgggaggg 64 ||||||||||||||||||||| Sbjct: 173104 atcaatggatacctgggaggg 173084
>gb|AC129949.4| Branchiostoma floridae, clone -25H14, complete sequence Length = 71462 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 aaaaagaaaagacaggaaggc 243 ||||||||||||||||||||| Sbjct: 70132 aaaaagaaaagacaggaaggc 70112
>gb|AC007510.6|AC007510 Homo sapiens chromosome 17, clone hRPK.678_P_16, complete sequence Length = 156420 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 ggcacataaacattaaaaact 305 ||||||||||||||||||||| Sbjct: 105046 ggcacataaacattaaaaact 105026
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 acataaacattaaaaactaga 308 ||||||||||||||||||||| Sbjct: 16856377 acataaacattaaaaactaga 16856397
>gb|AC136504.23| Medicago truncatula clone mth2-13m6, complete sequence Length = 107180 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 acatgacacatctataaaat 84 |||||||||||||||||||| Sbjct: 60900 acatgacacatctataaaat 60919
>gb|BC056513.1| Danio rerio La ribonucleoprotein domain family, member 1, mRNA (cDNA clone IMAGE:6788848), partial cds Length = 2500 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 ccagttcatccactgcacagagtt 353 |||||||||||||||| ||||||| Sbjct: 656 ccagttcatccactgcccagagtt 679
>emb|BX548163.15| Zebrafish DNA sequence from clone CH211-135J7 in linkage group 10, complete sequence Length = 132400 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 cacataaacattaaaaacta 306 |||||||||||||||||||| Sbjct: 98929 cacataaacattaaaaacta 98948
>gb|AC007684.3| Homo sapiens BAC clone RP11-449G16 from 2, complete sequence Length = 196848 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 tacctggtcctaataaaaacaaat 176 ||||||||||||||||||| |||| Sbjct: 70952 tacctggtcctaataaaaaaaaat 70929
>gb|AC006210.4| Homo sapiens X BAC GS1-309P15 (Genome Systems Human BAC Library) complete sequence Length = 185638 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 atgacacatctataaaatgtccaa 90 ||||||||||||||| |||||||| Sbjct: 65207 atgacacatctataatatgtccaa 65184
>gb|AC140780.3| Mus musculus BAC clone RP24-500J16 from chromosome 5, complete sequence Length = 166260 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ataaacattaaaaactagat 309 |||||||||||||||||||| Sbjct: 145979 ataaacattaaaaactagat 145960
>emb|CT573324.3| CH251-10E6, complete sequence Length = 169419 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 atgacacatctataaaatgtccaa 90 ||||||||||||||| |||||||| Sbjct: 61717 atgacacatctataatatgtccaa 61694
>emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in linkage group 19, complete sequence Length = 72609 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggacatgacacatctat 79 |||||||||||||||||||| Sbjct: 51430 gagggacatgacacatctat 51449
>gb|AC150747.2| Mus musculus BAC clone RP23-249E15 from 5, complete sequence Length = 209364 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ataaacattaaaaactagat 309 |||||||||||||||||||| Sbjct: 181515 ataaacattaaaaactagat 181534
>emb|AL929494.8| Zebrafish DNA sequence from clone CH211-127N19 in linkage group 20, complete sequence Length = 98841 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cacataaacattaaaaacta 306 |||||||||||||||||||| Sbjct: 68357 cacataaacattaaaaacta 68338 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,992,938 Number of Sequences: 3902068 Number of extensions: 4992938 Number of successful extensions: 94114 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94004 Number of HSP's gapped (non-prelim): 110 length of query: 380 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 358 effective length of database: 17,147,199,772 effective search space: 6138697518376 effective search space used: 6138697518376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)