ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl50a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 44 0.26
2emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 44 0.26
3ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.0
4gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 42 1.0
5gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 1.0
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
7dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
8dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
9dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
10dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
11emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 42 1.0
12emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chro... 42 1.0
13gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete se... 40 4.1
14gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complet... 40 4.1
15emb|AL354711.24| Human DNA sequence from clone RP11-340N12 on ch... 40 4.1
16emb|AL137122.8| Human DNA sequence from clone RP1-119J15 on chro... 40 4.1
17emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in... 40 4.1
18gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, compl... 40 4.1
19gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome ... 40 4.1
20ref|NM_063033.1| Caenorhabditis elegans C15F1.1 (C15F1.1) mRNA, ... 40 4.1
21gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence 40 4.1
22emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in... 40 4.1
23gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, comple... 40 4.1
24gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 4.1
25gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cance... 40 4.1
26gb|AC006608.2| Caenorhabditis elegans cosmid C15F1, complete seq... 40 4.1
27dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.1
28dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.1
29gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complet... 40 4.1
30gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, co... 40 4.1

>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 160   aaaacaatgtatatagttctct 181
             ||||||||||||||||||||||
Sbjct: 97578 aaaacaatgtatatagttctct 97599



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>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
              complete sequence
          Length = 165993

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 224    ttcatataagctctcgactgagtttc 249
              |||||||| |||||||||||||||||
Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306



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>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 143  ttattgagcttaggggaaaaacaatgtat 171
            ||||| || ||||||||||||||||||||
Sbjct: 3443 ttattaagtttaggggaaaaacaatgtat 3415



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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    ttattgagcttaggggaaaaa 163
              |||||||||||||||||||||
Sbjct: 246866 ttattgagcttaggggaaaaa 246886



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>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   ttattgagcttaggggaaaaa 163
             |||||||||||||||||||||
Sbjct: 88447 ttattgagcttaggggaaaaa 88467



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 143      ttattgagcttaggggaaaaacaatgtat 171
                ||||| || ||||||||||||||||||||
Sbjct: 19118371 ttattaagtttaggggaaaaacaatgtat 19118399



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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 143   ttattgagcttaggggaaaaacaatgtat 171
             ||||| || ||||||||||||||||||||
Sbjct: 16620 ttattaagtttaggggaaaaacaatgtat 16648



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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 143    ttattgagcttaggggaaaaacaatgtat 171
              ||||| || ||||||||||||||||||||
Sbjct: 123892 ttattaagtttaggggaaaaacaatgtat 123920



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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 143  ttattgagcttaggggaaaaacaatgtat 171
            ||||| || ||||||||||||||||||||
Sbjct: 3441 ttattaagtttaggggaaaaacaatgtat 3413



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>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 143  ttattgagcttaggggaaaaacaatgtat 171
            ||||| || ||||||||||||||||||||
Sbjct: 1459 ttattaagtttaggggaaaaacaatgtat 1431



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>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    ttcttactaagttttcatata 231
              |||||||||||||||||||||
Sbjct: 141218 ttcttactaagttttcatata 141198



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>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete
              sequence
          Length = 195413

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    gtccacaaaggacacagacct 143
              |||||||||||||||||||||
Sbjct: 152418 gtccacaaaggacacagacct 152438



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>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence
          Length = 51685

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   gaaaaacaatgtatatagttctct 181
             |||||||||| |||||||||||||
Sbjct: 28326 gaaaaacaatatatatagttctct 28303



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>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence
          Length = 192092

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   atatagttctcttcttctaatggc 193
             |||| |||||||||||||||||||
Sbjct: 99542 atatggttctcttcttctaatggc 99565



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>emb|AL354711.24| Human DNA sequence from clone RP11-340N12 on chromosome 9 Contains the 3'
              end of a novel gene (FLJ25636) and the 5' end of a novel
              gene (FLJ20276), complete sequence
          Length = 162126

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 47     ttccaatcctgaatttgatttcca 70
              |||||||||||||||| |||||||
Sbjct: 145724 ttccaatcctgaatttcatttcca 145701



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>emb|AL137122.8| Human DNA sequence from clone RP1-119J15 on chromosome 6, complete
           sequence
          Length = 58484

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  aatttgatttccattgactg 77
           ||||||||||||||||||||
Sbjct: 827 aatttgatttccattgactg 808



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>emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in linkage group 5, complete
              sequence
          Length = 185915

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    ataaatatagtctctctttc 213
              ||||||||||||||||||||
Sbjct: 181778 ataaatatagtctctctttc 181797



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>gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, complete sequence
          Length = 125123

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tgtatatagttctcttcttc 186
             ||||||||||||||||||||
Sbjct: 87138 tgtatatagttctcttcttc 87157



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>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14,
             complete sequence
          Length = 151836

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   aaaacaatgtatatagttct 179
             ||||||||||||||||||||
Sbjct: 34730 aaaacaatgtatatagttct 34711



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>ref|NM_063033.1| Caenorhabditis elegans C15F1.1 (C15F1.1) mRNA, complete cds
          Length = 1083

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 58  aatttgatttccattgactg 77
           ||||||||||||||||||||
Sbjct: 903 aatttgatttccattgactg 884



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>gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence
          Length = 7342

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 170  atatagttctcttcttctaatggc 193
            |||| |||||||||||||||||||
Sbjct: 3933 atatggttctcttcttctaatggc 3910



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>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5,
             complete sequence
          Length = 160041

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   ataaatatagtctctctttc 213
             ||||||||||||||||||||
Sbjct: 88307 ataaatatagtctctctttc 88326



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>gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, complete sequence
          Length = 111857

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   tcttctaatggcataaatat 201
             ||||||||||||||||||||
Sbjct: 84384 tcttctaatggcataaatat 84403



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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ccaaaactttcatatctaaa 278
             ||||||||||||||||||||
Sbjct: 29599 ccaaaactttcatatctaaa 29580



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>gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 185470

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   gtgtccaaaactttcatatc 274
             ||||||||||||||||||||
Sbjct: 41312 gtgtccaaaactttcatatc 41293



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>gb|AC006608.2| Caenorhabditis elegans cosmid C15F1, complete sequence
          Length = 37656

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    aatttgatttccattgactg 77
             ||||||||||||||||||||
Sbjct: 35680 aatttgatttccattgactg 35661



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>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete
              sequences
          Length = 175110

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    aaactttcatatctaaacca 281
              ||||||||||||||||||||
Sbjct: 139050 aaactttcatatctaaacca 139031



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>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete
             sequences
          Length = 170973

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   aaactttcatatctaaacca 281
             ||||||||||||||||||||
Sbjct: 31136 aaactttcatatctaaacca 31117



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>gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complete sequence
          Length = 232568

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   atatagttctcttcttctaatggc 193
             |||| |||||||||||||||||||
Sbjct: 42584 atatggttctcttcttctaatggc 42607



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>gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, complete sequence
          Length = 194167

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   atatagttctcttcttctaatggc 193
             |||| |||||||||||||||||||
Sbjct: 78320 atatggttctcttcttctaatggc 78343


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,543,437
Number of Sequences: 3902068
Number of extensions: 3543437
Number of successful extensions: 61547
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61471
Number of HSP's gapped (non-prelim): 76
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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