>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                           
Query: 299     aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 358
               |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 8167369 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 8167428

                                                  
Query: 359     ctccgaagttctttgctgacaccggcacactgcaa 393
               |||| ||||| || | |||||| || |||||||||
Sbjct: 8167429 ctccaaagttattcgatgacactggaacactgcaa 8167463

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                           
Query: 299     aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 358
               |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 8165204 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 8165263

                                                  
Query: 359     ctccgaagttctttgctgacaccggcacactgcaa 393
               |||| ||||| || | |||||| || |||||||||
Sbjct: 8165264 ctccaaagttattcgatgacactggaacactgcaa 8165298

>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                         
Query: 299   aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 358
             |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 98799 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 98858

                                                
Query: 359   ctccgaagttctttgctgacaccggcacactgcaa 393
             |||| ||||| || | |||||| || |||||||||
Sbjct: 98859 ctccaaagttattcgatgacactggaacactgcaa 98893

>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full
            insert sequence
          Length = 3250

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 299  aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 358
            |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 2886 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 2827

                                               
Query: 359  ctccgaagttctttgctgacaccggcacactgcaa 393
            |||| ||||| || | |||||| || |||||||||
Sbjct: 2826 ctccaaagttattcgatgacactggaacactgcaa 2792

>dbj|AK061989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B09, full
            insert sequence
          Length = 1742

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 299  aaacatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggat 358
            |||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||
Sbjct: 1445 aaacctgtcaggagcatgcagcttccaccactagactttttgtgaccccactgcatggat 1386

                                               
Query: 359  ctccgaagttctttgctgacaccggcacactgcaa 393
            |||| ||||| || | |||||| || |||||||||
Sbjct: 1385 ctccaaagttattcgatgacactggaacactgcaa 1351

>gb|AY106585.1| Zea mays PCO110346 mRNA sequence
          Length = 1036

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 97/120 (80%)
 Strand = Plus / Minus

                                                                       
Query: 301 acatgtcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggatct 360
           |||||||| |||||||||||||| ||  |||| ||||||||||| ||| | ||||||| |
Sbjct: 792 acatgtcacgagcatgcagcttcaactgcaaggctttttgtgacccctgtacatggattt 733

                                                                       
Query: 361 ccgaagttctttgctgacaccggcacactgcaactgctcaccccgacgcatgccccctga 420
           || || |  || |  ||||| ||||| ||||| |||||||| |||| ||| ||| |||||
Sbjct: 732 ccaaaataattcgacgacactggcacgctgcagctgctcactccgatgcaagcctcctga 673

>gb|AC161766.2| Mus musculus BAC clone RP23-39O12 from chromosome 12, complete sequence
          Length = 224641

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 141    taagtagacaatttactagttt 162
              ||||||||||||||||||||||
Sbjct: 217131 taagtagacaatttactagttt 217152

>gb|AC090677.13| Homo sapiens 12 BAC RP11-637N6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 60429

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 174  atagattttggaatattttattccat 199
            ||||||||||||||||| ||||||||
Sbjct: 5118 atagattttggaatattatattccat 5143

>gb|AY280500.2| Sandersonia aurantiaca beta-galactosidase (GAL3) mRNA, partial cds
          Length = 2618

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 306  tcatgagcatgcagcttcgaccacaagactttttgtgactcctctgcatggatc 359
            |||||||||||||||||| ||  |||| || ||  | |||||||||||||||||
Sbjct: 2457 tcatgagcatgcagcttcaactgcaaggctcttgataactcctctgcatggatc 2404

>gb|AY104777.1| Zea mays PCO062010 mRNA sequence
          Length = 1069

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 117 actaacaagtagtacaactcat 138
           ||||||||||||||||||||||
Sbjct: 952 actaacaagtagtacaactcat 931

>gb|AC064868.5| Homo sapiens BAC clone RP11-473E10 from 2, complete sequence
          Length = 178181

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   aatagattttggaatatttta 193
             |||||||||||||||||||||
Sbjct: 16846 aatagattttggaatatttta 16866

>ref|XM_415886.1| PREDICTED: Gallus gallus similar to KIAA1287 protein (LOC417641),
           mRNA
          Length = 1965

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 181 ttggaatattttattccatc 200
           ||||||||||||||||||||
Sbjct: 920 ttggaatattttattccatc 901

>ref|NM_001030722.1| Gallus gallus integrator complex subunit 2 (INTS2), mRNA
          Length = 5076

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  ttggaatattttattccatc 200
            ||||||||||||||||||||
Sbjct: 4025 ttggaatattttattccatc 4006

>ref|XM_958751.1| Neurospora crassa OR74A hypothetical protein (NCU02751.1) partial
            mRNA
          Length = 3477

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ttttcgtttgacttatctct 73
            ||||||||||||||||||||
Sbjct: 2639 ttttcgtttgacttatctct 2620

>ref|XM_331949.1| Neurospora crassa OR74A hypothetical protein (NCU02751.1) partial
            mRNA
          Length = 3477

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ttttcgtttgacttatctct 73
            ||||||||||||||||||||
Sbjct: 2639 ttttcgtttgacttatctct 2620

>emb|CR388047.20| Zebrafish DNA sequence from clone DKEY-244D13, complete sequence
          Length = 223119

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tctcatctttagagatttta 31
             ||||||||||||||||||||
Sbjct: 84720 tctcatctttagagatttta 84739

>emb|X82464.1|MSLEGA2 M.salicifolia mRNA for legumin precursor (A2)
          Length = 1684

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 377 acaccggcacactgcaactgctca 400
           ||||||||||||| ||||||||||
Sbjct: 267 acaccggcacactccaactgctca 244

>emb|AJ719990.1| Gallus gallus mRNA for hypothetical protein, clone 9c3
          Length = 5076

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  ttggaatattttattccatc 200
            ||||||||||||||||||||
Sbjct: 4025 ttggaatattttattccatc 4006

>ref|XM_684346.1| PREDICTED: Danio rerio similar to GTPase, IMAP family member 7
            (LOC560949), mRNA
          Length = 2892

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   tctcatctttagagatttta 31
            ||||||||||||||||||||
Sbjct: 2695 tctcatctttagagatttta 2676

>emb|CR522900.1| Gallus gallus finished cDNA, clone ChEST396a11
          Length = 999

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 181 ttggaatattttattccatc 200
           ||||||||||||||||||||
Sbjct: 406 ttggaatattttattccatc 387

>gb|AC157791.6| Mus musculus chromosome 3, clone RP24-176D22, complete sequence
          Length = 179897

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    tagattttggaatattttat 194
              ||||||||||||||||||||
Sbjct: 120677 tagattttggaatattttat 120696

>gb|AC087330.6| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-3M10, complete
              sequence
          Length = 206093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 222    ttattgtttcttgcctgtttgtct 245
              |||||||| |||||||||||||||
Sbjct: 133425 ttattgttacttgcctgtttgtct 133448

>emb|BX004816.11| Zebrafish DNA sequence from clone DKEY-30G5 in linkage group 3, complete
              sequence
          Length = 231341

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     tctcatctttagagatttta 31
              ||||||||||||||||||||
Sbjct: 178215 tctcatctttagagatttta 178234

>emb|BX005442.10| Zebrafish DNA sequence from clone DKEY-88J15, complete sequence
          Length = 200176

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     tctcatctttagagatttta 31
              ||||||||||||||||||||
Sbjct: 161469 tctcatctttagagatttta 161488

>gb|AC026191.4| Homo sapiens chromosome 3 clone RP11-380O24 map 3p, complete sequence
          Length = 164528

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    tgctctaatagattttggaa 186
              ||||||||||||||||||||
Sbjct: 143927 tgctctaatagattttggaa 143946


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,955,543
Number of Sequences: 3902068
Number of extensions: 3955543
Number of successful extensions: 79775
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79694
Number of HSP's gapped (non-prelim): 81
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)