>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  117 bits (59), Expect = 3e-23
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                            
Query: 232      aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 291
                ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 19143413 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 19143356

                                                                            
Query: 292      gtccaagtcatcagccaaaaataagatggcataatagaac-taagacaccaacaaatgtt 350
                |||||||||||||||||||||||||||| |||| |||||| ||||  |||||||||||||
Sbjct: 19143355 gtccaagtcatcagccaaaaataagatgacatactagaacttaagtgaccaacaaatgtt 19143296

                  
Query: 351      ga 352
                ||
Sbjct: 19143295 ga 19143294

>dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A05, full
            insert sequence
          Length = 2337

 Score =  117 bits (59), Expect = 3e-23
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                        
Query: 232  aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 291
            ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 1985 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 1928

                                                                        
Query: 292  gtccaagtcatcagccaaaaataagatggcataatagaac-taagacaccaacaaatgtt 350
            |||||||||||||||||||||||||||| |||| |||||| ||||  |||||||||||||
Sbjct: 1927 gtccaagtcatcagccaaaaataagatgacatactagaacttaagtgaccaacaaatgtt 1868

              
Query: 351  ga 352
            ||
Sbjct: 1867 ga 1866

>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score =  117 bits (59), Expect = 3e-23
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                         
Query: 232   aaatgcctaagaattaacagtcagaagtccacgacataagctgcttgccctggcagtatt 291
             ||||||||||||||||   ||||||| ||  |||||||||||||||||||||| ||  ||
Sbjct: 76933 aaatgcctaagaattat--gtcagaattctgcgacataagctgcttgccctggtagagtt 76876

                                                                         
Query: 292   gtccaagtcatcagccaaaaataagatggcataatagaac-taagacaccaacaaatgtt 350
             |||||||||||||||||||||||||||| |||| |||||| ||||  |||||||||||||
Sbjct: 76875 gtccaagtcatcagccaaaaataagatgacatactagaacttaagtgaccaacaaatgtt 76816

               
Query: 351   ga 352
             ||
Sbjct: 76815 ga 76814

>gb|AY110082.1| Zea mays CL50599_1 mRNA sequence
          Length = 821

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                              
Query: 271 gctgcttgccctggcagtattgtccaagtcatcagccaaaaataagatggc 321
           |||||||||||||| ||| ||||||||| |||||||| |||||||||||||
Sbjct: 443 gctgcttgccctggaagtgttgtccaagccatcagccgaaaataagatggc 493



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 35/38 (92%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                 
Query: 226 tgttagaaatgcctaagaattaaca--gtcagaagtcc 261
           |||||| ||||||||||||||||||  |||||||||||
Sbjct: 388 tgttaggaatgcctaagaattaacaaggtcagaagtcc 425

>emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in linkage group 24,
             complete sequence
          Length = 166302

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 4     taaatttggtacattaataattt 26
             |||||||||||||||||||||||
Sbjct: 51137 taaatttggtacattaataattt 51115

>emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 in linkage group 5,
              complete sequence
          Length = 123661

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 56     tcccccctcaaacttgatggtt 77
              ||||||||||||||||||||||
Sbjct: 102925 tcccccctcaaacttgatggtt 102904

>ref|NM_111250.2| Arabidopsis thaliana binding AT3G03790 transcript variant
           AT3G03790.1 mRNA, complete cds
          Length = 4023

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 177 tgcttcttttactctagaaga 197
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871

>ref|NM_202484.1| Arabidopsis thaliana binding AT3G03790 transcript variant
           AT3G03790.2 mRNA, complete cds
          Length = 4032

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 177 tgcttcttttactctagaaga 197
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871

>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence,
             complete sequence
          Length = 101410

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 177   tgcttcttttactctagaaga 197
             |||||||||||||||||||||
Sbjct: 53272 tgcttcttttactctagaaga 53252

>dbj|AK117198.1| Arabidopsis thaliana At3g03790 mRNA for unknown protein, complete
           cds, clone: RAFL16-74-J10
          Length = 4024

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 177 tgcttcttttactctagaaga 197
           |||||||||||||||||||||
Sbjct: 851 tgcttcttttactctagaaga 871

>ref|NM_138421.1| Homo sapiens serum amyloid A-like 1 (SAAL1), mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 613 caacaaatgttgacttgctg 632

>gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, complete sequence
          Length = 191726

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    aactaagacaccaacaaatg 348
              ||||||||||||||||||||
Sbjct: 119412 aactaagacaccaacaaatg 119431

>ref|XM_521852.1| PREDICTED: Pan troglodytes similar to tryptophan hydroxylase 1;
            tryptophan 5-monooxygenase; tryptophan hydroxylase
            (tryptophan 5-monooxygenase) (LOC466453), mRNA
          Length = 3222

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  caacaaatgttgacttgctg 359
            ||||||||||||||||||||
Sbjct: 1037 caacaaatgttgacttgctg 1056

>ref|XM_581261.2| PREDICTED: Bos taurus hypothetical LOC505038 (LOC505038), mRNA
          Length = 1608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 592 caacaaatgttgacttgctg 611

>ref|XM_871078.1| PREDICTED: Bos taurus hypothetical protein LOC618752 (LOC618752),
           mRNA
          Length = 546

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 344 caacaaatgttgacttgctg 363

>gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, complete sequence
          Length = 193216

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    aactaagacaccaacaaatg 348
              ||||||||||||||||||||
Sbjct: 124071 aactaagacaccaacaaatg 124052

>emb|AL513527.9| Human DNA sequence from clone RP11-530M23 on chromosome 6 Contains part
             of the LAMA2 gene for laminin, alpha 2 (merosin,
             congenital muscular dystrophy) (LAMM), complete sequence
          Length = 139123

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 234   atgcctaagaattaacagtcagaa 257
             |||||||||||||| |||||||||
Sbjct: 82540 atgcctaagaattatcagtcagaa 82517

>emb|AJ311754.1|CEP311754 Clarkia epilobioides partial pgiC2 gene for cytosolic phosphoglucose
            isomerase, exons 4-16
          Length = 4209

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 373  acatttcacacttcagacacccaa 396
            |||||||| |||||||||||||||
Sbjct: 3093 acatttcaaacttcagacacccaa 3070

>emb|CR624243.1| full-length cDNA clone CS0DA009YL04 of Neuroblastoma of Homo
           sapiens (human)
          Length = 1503

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 627 caacaaatgttgacttgctg 646

>emb|CR623466.1| full-length cDNA clone CS0DE006YJ05 of Placenta of Homo sapiens
           (human)
          Length = 1484

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 598 caacaaatgttgacttgctg 617

>dbj|AK123457.1| Homo sapiens cDNA FLJ41463 fis, clone BRSTN2017237
          Length = 1521

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 625 caacaaatgttgacttgctg 644

>emb|CR616217.1| full-length cDNA clone CS0DH004YC04 of T cells (Jurkat cell line)
           of Homo sapiens (human)
          Length = 1487

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 591 caacaaatgttgacttgctg 610

>emb|CR597687.1| full-length cDNA clone CS0DJ006YI14 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1487

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 627 caacaaatgttgacttgctg 646

>emb|CR590267.1| full-length cDNA clone CS0DJ011YI17 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1451

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 579 caacaaatgttgacttgctg 598

>ref|XM_680258.1| PREDICTED: Danio rerio similar to Hiat1-prov protein (LOC557243),
           mRNA
          Length = 1962

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 tcagttcagtgttcagagtt 423
           ||||||||||||||||||||
Sbjct: 760 tcagttcagtgttcagagtt 779

>dbj|BS000238.1| Pan troglodytes chromosome 22 clone:PTB-016O01, map 22, complete
            sequences
          Length = 168017

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 408  ttcagtgttcagagttgttg 427
            ||||||||||||||||||||
Sbjct: 7944 ttcagtgttcagagttgttg 7925

>dbj|BS000237.1| Pan troglodytes chromosome 22 clone:PTB-044B23, map 22, complete
             sequences
          Length = 144611

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   ttcagtgttcagagttgttg 427
             ||||||||||||||||||||
Sbjct: 75305 ttcagtgttcagagttgttg 75286

>emb|AL929201.6| Zebrafish DNA sequence from clone CH211-66G24 in linkage group 8,
             complete sequence
          Length = 186121

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   tcagttcagtgttcagagtt 423
             ||||||||||||||||||||
Sbjct: 44081 tcagttcagtgttcagagtt 44062

>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    ttcagtgttcagagttgttg 427
              ||||||||||||||||||||
Sbjct: 282324 ttcagtgttcagagttgttg 282305

>gb|BC012010.1| Homo sapiens serum amyloid A-like 1, mRNA (cDNA clone MGC:21579
           IMAGE:4473003), complete cds
          Length = 1527

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 caacaaatgttgacttgctg 359
           ||||||||||||||||||||
Sbjct: 613 caacaaatgttgacttgctg 632

>dbj|AP001050.1| Homo sapiens genomic DNA, chromosome 21, clone:KB953G5, MX1-D21S171
             region, complete sequence
          Length = 98992

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   ttcagtgttcagagttgttg 427
             ||||||||||||||||||||
Sbjct: 60241 ttcagtgttcagagttgttg 60222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,549,000
Number of Sequences: 3902068
Number of extensions: 3549000
Number of successful extensions: 63931
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63840
Number of HSP's gapped (non-prelim): 85
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)